* samtools-0.1.9-5 (r802)

 * relax tandem penalty. this will be made a command-line option in future.

diff --git a/bam2bcf.c b/bam2bcf.c
index 384e481cbc5e6d9d4cae4f2e50a66008f29f1c84..f7c48aa94f32e417d718371ee0c621b906ea0b85 100644 (file)
--- a/bam2bcf.c
+++ b/bam2bcf.c
@@ -20,7 +20,7 @@ bcf_callaux_t *bcf_call_init(double theta, int min_baseQ)
        if (theta <= 0.) theta = CALL_DEFTHETA;
        bca = calloc(1, sizeof(bcf_callaux_t));
        bca->capQ = 60;
-       bca->openQ = 40; bca->extQ = 20; bca->tandemQ = 80;
+       bca->openQ = 40; bca->extQ = 20; bca->tandemQ = 100;
        bca->min_baseQ = min_baseQ;
        bca->e = errmod_init(1. - theta);
        return bca;

diff --git a/bamtk.c b/bamtk.c
index 35eb2a58aab826c3b59228cc89447be39f0120d0..2c441cd8147996245830786a8f7cbdc131b3a31d 100644 (file)
--- a/bamtk.c
+++ b/bamtk.c
@@ -9,7 +9,7 @@
 #endif
 
 #ifndef PACKAGE_VERSION
-#define PACKAGE_VERSION "0.1.9-4 (r801)"
+#define PACKAGE_VERSION "0.1.9-5 (r802)"
 #endif
 
 int bam_taf2baf(int argc, char *argv[]);