From ff6d24e37138561b372621eb4b7418e6292c1494 Mon Sep 17 00:00:00 2001
From: Heng Li <lh3@live.co.uk>
Date: Tue, 9 Nov 2010 04:53:15 +0000
Subject: [PATCH]  * samtools-0.1.9-5 (r802)  * relax tandem penalty. this will
 be made a command-line option in future.

---
 bam2bcf.c | 2 +-
 bamtk.c   | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/bam2bcf.c b/bam2bcf.c
index 384e481..f7c48aa 100644
--- a/bam2bcf.c
+++ b/bam2bcf.c
@@ -20,7 +20,7 @@ bcf_callaux_t *bcf_call_init(double theta, int min_baseQ)
 	if (theta <= 0.) theta = CALL_DEFTHETA;
 	bca = calloc(1, sizeof(bcf_callaux_t));
 	bca->capQ = 60;
-	bca->openQ = 40; bca->extQ = 20; bca->tandemQ = 80;
+	bca->openQ = 40; bca->extQ = 20; bca->tandemQ = 100;
 	bca->min_baseQ = min_baseQ;
 	bca->e = errmod_init(1. - theta);
 	return bca;
diff --git a/bamtk.c b/bamtk.c
index 35eb2a5..2c441cd 100644
--- a/bamtk.c
+++ b/bamtk.c
@@ -9,7 +9,7 @@
 #endif
 
 #ifndef PACKAGE_VERSION
-#define PACKAGE_VERSION "0.1.9-4 (r801)"
+#define PACKAGE_VERSION "0.1.9-5 (r802)"
 #endif
 
 int bam_taf2baf(int argc, char *argv[]);
-- 
2.39.2