Modifed README.md and WHAT_IS_NEW

diff --git a/README.md b/README.md
index e59fb357ed34abab97a94ea5aaa1efe8e7bd25e8..087493d515369c29d28063f72a4134e2d4a0762d 100644 (file)
--- a/README.md
+++ b/README.md
@@ -414,6 +414,7 @@ RSEM uses the [Boost C++](http://www.boost.org) and
 differential expression analysis.
 
 We thank earonesty for contributing patches.
+We thank Han Lin for suggesting possible fixes. 
 
 ## <a name="license"></a> License
 

diff --git a/WHAT_IS_NEW b/WHAT_IS_NEW
index 64dc6e55768b12dc467e1909b84a964c7dab3d9a..28108dcfac60eb05c39224ee73e09b58b80d3763 100644 (file)
--- a/WHAT_IS_NEW
+++ b/WHAT_IS_NEW
@@ -1,3 +1,13 @@
+RSEM v1.2.4
+
+- Fixed a bug that leads to poor parallelization performance in Mac OS systems
+- Fixed a problem that may halt the 'rsem-gen-transcript-plots", thanks Han Lin for pointing out the problem and suggesting possible fixes  
+- Added some user-friendly error messages for converting transcript BAM files into genomic BAM files
+- Modified rsem-tbam2gbam so that the original alignment quality MAPQ will be preserved if the input bam is not from RSEM
+- Added user-friendly error messages if users forget to compile the source codes
+
+--------------------------------------------------------------------------------------------
+
 RSEM v1.2.3
 
 - Fixed a bug in 'EBSeq/rsem-for-ebseq-generate-ngvector-from-clustering-info' which may crash the script