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RSEM Source Codes
authorBo Li <bli@cs.wisc.edu>
Wed, 9 Feb 2011 05:36:23 +0000 (23:36 -0600)
committerBo Li <bli@cs.wisc.edu>
Wed, 9 Feb 2011 05:36:23 +0000 (23:36 -0600)
commita95154919f950f86de9104b2b9dcf1f0c7e83387
tree38be2c8d5d36b128a891f5256e99496a7dc6359dtree | snapshot
RSEM Source Codes
1643 files changed:
AlignerRefSeqPolicy.h [new file with mode: 0644] blob
BamWriter.h [new file with mode: 0644] blob
COPYING [new file with mode: 0644] blob
EM.cpp [new file with mode: 0644] blob
GTFItem.h [new file with mode: 0644] blob
Gibbs.cpp [new file with mode: 0644] blob
GroupInfo.h [new file with mode: 0644] blob
HitContainer.h [new file with mode: 0644] blob
HitWrapper.h [new file with mode: 0644] blob
LenDist.h [new file with mode: 0644] blob
Model.h [new file with mode: 0644] blob
ModelParams.h [new file with mode: 0644] blob
NoiseProfile.h [new file with mode: 0644] blob
NoiseQProfile.h [new file with mode: 0644] blob
Orientation.h [new file with mode: 0644] blob
PairedEndHit.h [new file with mode: 0644] blob
PairedEndModel.h [new file with mode: 0644] blob
PairedEndQModel.h [new file with mode: 0644] blob
PairedEndRead.h [new file with mode: 0644] blob
PairedEndReadQ.h [new file with mode: 0644] blob
PolyARules.h [new file with mode: 0644] blob
Profile.h [new file with mode: 0644] blob
QProfile.h [new file with mode: 0644] blob
QualDist.h [new file with mode: 0644] blob
README.txt [new file with mode: 0644] blob
RSPD.h [new file with mode: 0644] blob
Read.h [new file with mode: 0644] blob
ReadIndex.h [new file with mode: 0644] blob
ReadReader.h [new file with mode: 0644] blob
RefSeq.h [new file with mode: 0644] blob
RefSeqPolicy.h [new file with mode: 0644] blob
Refs.h [new file with mode: 0644] blob
SamParser.h [new file with mode: 0644] blob
SingleHit.h [new file with mode: 0644] blob
SingleModel.h [new file with mode: 0644] blob
SingleQModel.h [new file with mode: 0644] blob
SingleRead.h [new file with mode: 0644] blob
SingleReadQ.h [new file with mode: 0644] blob
Transcript.h [new file with mode: 0644] blob
Transcripts.h [new file with mode: 0644] blob
bam2wig.cpp [new file with mode: 0644] blob
boost/aligned_storage.hpp [new file with mode: 0644] blob
boost/array.hpp [new file with mode: 0644] blob
boost/assert.hpp [new file with mode: 0644] blob
boost/call_traits.hpp [new file with mode: 0644] blob
boost/checked_delete.hpp [new file with mode: 0644] blob
boost/config.hpp [new file with mode: 0644] blob
boost/config/abi/borland_prefix.hpp [new file with mode: 0644] blob
boost/config/abi/borland_suffix.hpp [new file with mode: 0644] blob
boost/config/abi/msvc_prefix.hpp [new file with mode: 0644] blob
boost/config/abi/msvc_suffix.hpp [new file with mode: 0644] blob
boost/config/abi_prefix.hpp [new file with mode: 0644] blob
boost/config/abi_suffix.hpp [new file with mode: 0644] blob
boost/config/auto_link.hpp [new file with mode: 0644] blob
boost/config/compiler/borland.hpp [new file with mode: 0644] blob
boost/config/compiler/clang.hpp [new file with mode: 0644] blob
boost/config/compiler/codegear.hpp [new file with mode: 0644] blob
boost/config/compiler/comeau.hpp [new file with mode: 0644] blob
boost/config/compiler/common_edg.hpp [new file with mode: 0644] blob
boost/config/compiler/compaq_cxx.hpp [new file with mode: 0644] blob
boost/config/compiler/digitalmars.hpp [new file with mode: 0644] blob
boost/config/compiler/gcc.hpp [new file with mode: 0644] blob
boost/config/compiler/gcc_xml.hpp [new file with mode: 0644] blob
boost/config/compiler/greenhills.hpp [new file with mode: 0644] blob
boost/config/compiler/hp_acc.hpp [new file with mode: 0644] blob
boost/config/compiler/intel.hpp [new file with mode: 0644] blob
boost/config/compiler/kai.hpp [new file with mode: 0644] blob
boost/config/compiler/metrowerks.hpp [new file with mode: 0644] blob
boost/config/compiler/mpw.hpp [new file with mode: 0644] blob
boost/config/compiler/nvcc.hpp [new file with mode: 0644] blob
boost/config/compiler/pgi.hpp [new file with mode: 0644] blob
boost/config/compiler/sgi_mipspro.hpp [new file with mode: 0644] blob
boost/config/compiler/sunpro_cc.hpp [new file with mode: 0644] blob
boost/config/compiler/vacpp.hpp [new file with mode: 0644] blob
boost/config/compiler/visualc.hpp [new file with mode: 0644] blob
boost/config/no_tr1/cmath.hpp [new file with mode: 0644] blob
boost/config/no_tr1/complex.hpp [new file with mode: 0644] blob
boost/config/no_tr1/functional.hpp [new file with mode: 0644] blob
boost/config/no_tr1/memory.hpp [new file with mode: 0644] blob
boost/config/no_tr1/utility.hpp [new file with mode: 0644] blob
boost/config/platform/aix.hpp [new file with mode: 0644] blob
boost/config/platform/amigaos.hpp [new file with mode: 0644] blob
boost/config/platform/beos.hpp [new file with mode: 0644] blob
boost/config/platform/bsd.hpp [new file with mode: 0644] blob
boost/config/platform/cygwin.hpp [new file with mode: 0644] blob
boost/config/platform/hpux.hpp [new file with mode: 0644] blob
boost/config/platform/irix.hpp [new file with mode: 0644] blob
boost/config/platform/linux.hpp [new file with mode: 0644] blob
boost/config/platform/macos.hpp [new file with mode: 0644] blob
boost/config/platform/qnxnto.hpp [new file with mode: 0644] blob
boost/config/platform/solaris.hpp [new file with mode: 0644] blob
boost/config/platform/symbian.hpp [new file with mode: 0644] blob
boost/config/platform/vxworks.hpp [new file with mode: 0644] blob
boost/config/platform/win32.hpp [new file with mode: 0644] blob
boost/config/posix_features.hpp [new file with mode: 0644] blob
boost/config/requires_threads.hpp [new file with mode: 0644] blob
boost/config/select_compiler_config.hpp [new file with mode: 0644] blob
boost/config/select_platform_config.hpp [new file with mode: 0644] blob
boost/config/select_stdlib_config.hpp [new file with mode: 0644] blob
boost/config/stdlib/dinkumware.hpp [new file with mode: 0644] blob
boost/config/stdlib/libcomo.hpp [new file with mode: 0644] blob
boost/config/stdlib/libstdcpp3.hpp [new file with mode: 0644] blob
boost/config/stdlib/modena.hpp [new file with mode: 0644] blob
boost/config/stdlib/msl.hpp [new file with mode: 0644] blob
boost/config/stdlib/roguewave.hpp [new file with mode: 0644] blob
boost/config/stdlib/sgi.hpp [new file with mode: 0644] blob
boost/config/stdlib/stlport.hpp [new file with mode: 0644] blob
boost/config/stdlib/vacpp.hpp [new file with mode: 0644] blob
boost/config/suffix.hpp [new file with mode: 0644] blob
boost/config/user.hpp [new file with mode: 0644] blob
boost/config/warning_disable.hpp [new file with mode: 0644] blob
boost/cstdint.hpp [new file with mode: 0644] blob
boost/current_function.hpp [new file with mode: 0644] blob
boost/detail/call_traits.hpp [new file with mode: 0644] blob
boost/detail/endian.hpp [new file with mode: 0644] blob
boost/detail/interlocked.hpp [new file with mode: 0644] blob
boost/detail/iterator.hpp [new file with mode: 0644] blob
boost/detail/lcast_precision.hpp [new file with mode: 0644] blob
boost/detail/limits.hpp [new file with mode: 0644] blob
boost/detail/ob_call_traits.hpp [new file with mode: 0644] blob
boost/detail/reference_content.hpp [new file with mode: 0644] blob
boost/detail/sp_typeinfo.hpp [new file with mode: 0644] blob
boost/detail/workaround.hpp [new file with mode: 0644] blob
boost/exception/detail/attribute_noreturn.hpp [new file with mode: 0644] blob
boost/exception/exception.hpp [new file with mode: 0644] blob
boost/format.hpp [new file with mode: 0644] blob
boost/format/alt_sstream.hpp [new file with mode: 0644] blob
boost/format/alt_sstream_impl.hpp [new file with mode: 0644] blob
boost/format/detail/compat_workarounds.hpp [new file with mode: 0644] blob
boost/format/detail/config_macros.hpp [new file with mode: 0644] blob
boost/format/detail/msvc_disambiguater.hpp [new file with mode: 0644] blob
boost/format/detail/unset_macros.hpp [new file with mode: 0644] blob
boost/format/detail/workarounds_gcc-2_95.hpp [new file with mode: 0644] blob
boost/format/detail/workarounds_stlport.hpp [new file with mode: 0644] blob
boost/format/exceptions.hpp [new file with mode: 0644] blob
boost/format/feed_args.hpp [new file with mode: 0644] blob
boost/format/format_class.hpp [new file with mode: 0644] blob
boost/format/format_fwd.hpp [new file with mode: 0644] blob
boost/format/format_implementation.hpp [new file with mode: 0644] blob
boost/format/free_funcs.hpp [new file with mode: 0644] blob
boost/format/group.hpp [new file with mode: 0644] blob
boost/format/internals.hpp [new file with mode: 0644] blob
boost/format/internals_fwd.hpp [new file with mode: 0644] blob
boost/format/parsing.hpp [new file with mode: 0644] blob
boost/fusion/adapted/std_pair.hpp [new file with mode: 0644] blob
boost/fusion/adapted/struct/adapt_struct.hpp [new file with mode: 0644] blob
boost/fusion/adapted/struct/detail/adapt_base.hpp [new file with mode: 0644] blob
boost/fusion/adapted/struct/detail/at_impl.hpp [new file with mode: 0644] blob
boost/fusion/adapted/struct/detail/begin_impl.hpp [new file with mode: 0644] blob
boost/fusion/adapted/struct/detail/category_of_impl.hpp [new file with mode: 0644] blob
boost/fusion/adapted/struct/detail/deref_impl.hpp [new file with mode: 0644] blob
boost/fusion/adapted/struct/detail/end_impl.hpp [new file with mode: 0644] blob
boost/fusion/adapted/struct/detail/extension.hpp [new file with mode: 0644] blob
boost/fusion/adapted/struct/detail/is_sequence_impl.hpp [new file with mode: 0644] blob
boost/fusion/adapted/struct/detail/is_view_impl.hpp [new file with mode: 0644] blob
boost/fusion/adapted/struct/detail/size_impl.hpp [new file with mode: 0644] blob
boost/fusion/adapted/struct/detail/value_at_impl.hpp [new file with mode: 0644] blob
boost/fusion/adapted/struct/detail/value_of_impl.hpp [new file with mode: 0644] blob
boost/fusion/container/generation/ignore.hpp [new file with mode: 0644] blob
boost/fusion/container/vector/detail/advance_impl.hpp [new file with mode: 0644] blob
boost/fusion/container/vector/detail/at_impl.hpp [new file with mode: 0644] blob
boost/fusion/container/vector/detail/begin_impl.hpp [new file with mode: 0644] blob
boost/fusion/container/vector/detail/deref_impl.hpp [new file with mode: 0644] blob
boost/fusion/container/vector/detail/distance_impl.hpp [new file with mode: 0644] blob
boost/fusion/container/vector/detail/end_impl.hpp [new file with mode: 0644] blob
boost/fusion/container/vector/detail/equal_to_impl.hpp [new file with mode: 0644] blob
boost/fusion/container/vector/detail/next_impl.hpp [new file with mode: 0644] blob
boost/fusion/container/vector/detail/prior_impl.hpp [new file with mode: 0644] blob
boost/fusion/container/vector/detail/value_at_impl.hpp [new file with mode: 0644] blob
boost/fusion/container/vector/detail/value_of_impl.hpp [new file with mode: 0644] blob
boost/fusion/container/vector/detail/vector_forward_ctor.hpp [new file with mode: 0644] blob
boost/fusion/container/vector/detail/vector_n.hpp [new file with mode: 0644] blob
boost/fusion/container/vector/detail/vector_n_chooser.hpp [new file with mode: 0644] blob
boost/fusion/container/vector/limits.hpp [new file with mode: 0644] blob
boost/fusion/container/vector/vector.hpp [new file with mode: 0644] blob
boost/fusion/container/vector/vector10.hpp [new file with mode: 0644] blob
boost/fusion/container/vector/vector20.hpp [new file with mode: 0644] blob
boost/fusion/container/vector/vector30.hpp [new file with mode: 0644] blob
boost/fusion/container/vector/vector40.hpp [new file with mode: 0644] blob
boost/fusion/container/vector/vector50.hpp [new file with mode: 0644] blob
boost/fusion/container/vector/vector_fwd.hpp [new file with mode: 0644] blob
boost/fusion/container/vector/vector_iterator.hpp [new file with mode: 0644] blob
boost/fusion/include/std_pair.hpp [new file with mode: 0644] blob
boost/fusion/include/tuple.hpp [new file with mode: 0644] blob
boost/fusion/iterator/basic_iterator.hpp [new file with mode: 0644] blob
boost/fusion/iterator/deref.hpp [new file with mode: 0644] blob
boost/fusion/iterator/detail/advance.hpp [new file with mode: 0644] blob
boost/fusion/iterator/detail/distance.hpp [new file with mode: 0644] blob
boost/fusion/iterator/equal_to.hpp [new file with mode: 0644] blob
boost/fusion/iterator/iterator_facade.hpp [new file with mode: 0644] blob
boost/fusion/iterator/next.hpp [new file with mode: 0644] blob
boost/fusion/iterator/prior.hpp [new file with mode: 0644] blob
boost/fusion/sequence/comparison.hpp [new file with mode: 0644] blob
boost/fusion/sequence/comparison/detail/enable_comparison.hpp [new file with mode: 0644] blob
boost/fusion/sequence/comparison/detail/equal_to.hpp [new file with mode: 0644] blob
boost/fusion/sequence/comparison/detail/greater.hpp [new file with mode: 0644] blob
boost/fusion/sequence/comparison/detail/greater_equal.hpp [new file with mode: 0644] blob
boost/fusion/sequence/comparison/detail/less.hpp [new file with mode: 0644] blob
boost/fusion/sequence/comparison/detail/less_equal.hpp [new file with mode: 0644] blob
boost/fusion/sequence/comparison/detail/not_equal_to.hpp [new file with mode: 0644] blob
boost/fusion/sequence/comparison/equal_to.hpp [new file with mode: 0644] blob
boost/fusion/sequence/comparison/greater.hpp [new file with mode: 0644] blob
boost/fusion/sequence/comparison/greater_equal.hpp [new file with mode: 0644] blob
boost/fusion/sequence/comparison/less.hpp [new file with mode: 0644] blob
boost/fusion/sequence/comparison/less_equal.hpp [new file with mode: 0644] blob
boost/fusion/sequence/comparison/not_equal_to.hpp [new file with mode: 0644] blob
boost/fusion/sequence/intrinsic/at.hpp [new file with mode: 0644] blob
boost/fusion/sequence/intrinsic/begin.hpp [new file with mode: 0644] blob
boost/fusion/sequence/intrinsic/end.hpp [new file with mode: 0644] blob
boost/fusion/sequence/intrinsic/size.hpp [new file with mode: 0644] blob
boost/fusion/sequence/intrinsic/value_at.hpp [new file with mode: 0644] blob
boost/fusion/sequence/io.hpp [new file with mode: 0644] blob
boost/fusion/sequence/io/detail/in.hpp [new file with mode: 0644] blob
boost/fusion/sequence/io/detail/manip.hpp [new file with mode: 0644] blob
boost/fusion/sequence/io/detail/out.hpp [new file with mode: 0644] blob
boost/fusion/sequence/io/in.hpp [new file with mode: 0644] blob
boost/fusion/sequence/io/out.hpp [new file with mode: 0644] blob
boost/fusion/support/category_of.hpp [new file with mode: 0644] blob
boost/fusion/support/detail/access.hpp [new file with mode: 0644] blob
boost/fusion/support/detail/as_fusion_element.hpp [new file with mode: 0644] blob
boost/fusion/support/detail/category_of.hpp [new file with mode: 0644] blob
boost/fusion/support/detail/is_mpl_sequence.hpp [new file with mode: 0644] blob
boost/fusion/support/is_iterator.hpp [new file with mode: 0644] blob
boost/fusion/support/is_sequence.hpp [new file with mode: 0644] blob
boost/fusion/support/iterator_base.hpp [new file with mode: 0644] blob
boost/fusion/support/sequence_base.hpp [new file with mode: 0644] blob
boost/fusion/support/tag_of.hpp [new file with mode: 0644] blob
boost/fusion/support/tag_of_fwd.hpp [new file with mode: 0644] blob
boost/fusion/tuple.hpp [new file with mode: 0644] blob
boost/fusion/tuple/detail/tuple_expand.hpp [new file with mode: 0644] blob
boost/fusion/tuple/make_tuple.hpp [new file with mode: 0644] blob
boost/fusion/tuple/tuple.hpp [new file with mode: 0644] blob
boost/fusion/tuple/tuple_fwd.hpp [new file with mode: 0644] blob
boost/fusion/tuple/tuple_tie.hpp [new file with mode: 0644] blob
boost/integer_traits.hpp [new file with mode: 0644] blob
boost/lexical_cast.hpp [new file with mode: 0644] blob
boost/limits.hpp [new file with mode: 0644] blob
boost/math/constants/constants.hpp [new file with mode: 0644] blob
boost/math/distributions/complement.hpp [new file with mode: 0644] blob
boost/math/distributions/detail/common_error_handling.hpp [new file with mode: 0644] blob
boost/math/distributions/detail/derived_accessors.hpp [new file with mode: 0644] blob
boost/math/distributions/fwd.hpp [new file with mode: 0644] blob
boost/math/distributions/normal.hpp [new file with mode: 0644] blob
boost/math/policies/error_handling.hpp [new file with mode: 0644] blob
boost/math/policies/policy.hpp [new file with mode: 0644] blob
boost/math/special_functions/detail/erf_inv.hpp [new file with mode: 0644] blob
boost/math/special_functions/detail/fp_traits.hpp [new file with mode: 0644] blob
boost/math/special_functions/detail/gamma_inva.hpp [new file with mode: 0644] blob
boost/math/special_functions/detail/igamma_inverse.hpp [new file with mode: 0644] blob
boost/math/special_functions/detail/igamma_large.hpp [new file with mode: 0644] blob
boost/math/special_functions/detail/lanczos_sse2.hpp [new file with mode: 0644] blob
boost/math/special_functions/detail/lgamma_small.hpp [new file with mode: 0644] blob
boost/math/special_functions/detail/round_fwd.hpp [new file with mode: 0644] blob
boost/math/special_functions/detail/unchecked_factorial.hpp [new file with mode: 0644] blob
boost/math/special_functions/erf.hpp [new file with mode: 0644] blob
boost/math/special_functions/expm1.hpp [new file with mode: 0644] blob
boost/math/special_functions/fpclassify.hpp [new file with mode: 0644] blob
boost/math/special_functions/gamma.hpp [new file with mode: 0644] blob
boost/math/special_functions/lanczos.hpp [new file with mode: 0644] blob
boost/math/special_functions/log1p.hpp [new file with mode: 0644] blob
boost/math/special_functions/math_fwd.hpp [new file with mode: 0644] blob
boost/math/special_functions/powm1.hpp [new file with mode: 0644] blob
boost/math/special_functions/sign.hpp [new file with mode: 0644] blob
boost/math/special_functions/sqrt1pm1.hpp [new file with mode: 0644] blob
boost/math/special_functions/trunc.hpp [new file with mode: 0644] blob
boost/math/tools/config.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner1_10.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner1_11.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner1_12.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner1_13.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner1_14.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner1_15.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner1_16.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner1_17.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner1_18.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner1_19.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner1_2.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner1_20.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner1_3.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner1_4.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner1_5.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner1_6.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner1_7.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner1_8.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner1_9.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner2_10.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner2_11.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner2_12.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner2_13.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner2_14.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner2_15.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner2_16.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner2_17.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner2_18.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner2_19.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner2_2.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner2_20.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner2_3.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner2_4.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner2_5.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner2_6.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner2_7.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner2_8.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner2_9.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner3_10.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner3_11.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner3_12.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner3_13.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner3_14.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner3_15.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner3_16.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner3_17.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner3_18.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner3_19.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner3_2.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner3_20.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner3_3.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner3_4.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner3_5.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner3_6.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner3_7.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner3_8.hpp [new file with mode: 0644] blob
boost/math/tools/detail/polynomial_horner3_9.hpp [new file with mode: 0644] blob
boost/math/tools/detail/rational_horner1_10.hpp [new file with mode: 0644] blob
boost/math/tools/detail/rational_horner1_11.hpp [new file with mode: 0644] blob
boost/math/tools/detail/rational_horner1_12.hpp [new file with mode: 0644] blob
boost/math/tools/detail/rational_horner1_13.hpp [new file with mode: 0644] blob
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boost/type_traits/msvc/remove_cv.hpp [new file with mode: 0644] blob
boost/type_traits/msvc/remove_extent.hpp [new file with mode: 0644] blob
boost/type_traits/msvc/remove_pointer.hpp [new file with mode: 0644] blob
boost/type_traits/msvc/remove_reference.hpp [new file with mode: 0644] blob
boost/type_traits/msvc/remove_volatile.hpp [new file with mode: 0644] blob
boost/type_traits/msvc/typeof.hpp [new file with mode: 0644] blob
boost/type_traits/promote.hpp [new file with mode: 0644] blob
boost/type_traits/rank.hpp [new file with mode: 0644] blob
boost/type_traits/remove_all_extents.hpp [new file with mode: 0644] blob
boost/type_traits/remove_bounds.hpp [new file with mode: 0644] blob
boost/type_traits/remove_const.hpp [new file with mode: 0644] blob
boost/type_traits/remove_cv.hpp [new file with mode: 0644] blob
boost/type_traits/remove_extent.hpp [new file with mode: 0644] blob
boost/type_traits/remove_pointer.hpp [new file with mode: 0644] blob
boost/type_traits/remove_reference.hpp [new file with mode: 0644] blob
boost/type_traits/remove_volatile.hpp [new file with mode: 0644] blob
boost/type_traits/type_with_alignment.hpp [new file with mode: 0644] blob
boost/utility/addressof.hpp [new file with mode: 0644] blob
boost/utility/base_from_member.hpp [new file with mode: 0644] blob
boost/utility/compare_pointees.hpp [new file with mode: 0644] blob
boost/utility/enable_if.hpp [new file with mode: 0644] blob
boost/utility/swap.hpp [new file with mode: 0644] blob
boost/version.hpp [new file with mode: 0644] blob
buildReadIndex.cpp [new file with mode: 0644] blob
calcCI.cpp [new file with mode: 0644] blob
extractRef.cpp [new file with mode: 0644] blob
makefile [new file with mode: 0644] blob
mersenne.cpp [new file with mode: 0644] blob
parseIt.cpp [new file with mode: 0644] blob
preRef.cpp [new file with mode: 0644] blob
randomc.h [new file with mode: 0644] blob
rsem-calculate-expression [new file with mode: 0755] blob
rsem-prepare-reference [new file with mode: 0755] blob
sam/AUTHORS [new file with mode: 0644] blob
sam/COPYING [new file with mode: 0644] blob
sam/ChangeLog [new file with mode: 0644] blob
sam/INSTALL [new file with mode: 0644] blob
sam/Makefile [new file with mode: 0644] blob
sam/Makefile.mingw [new file with mode: 0644] blob
sam/NEWS [new file with mode: 0644] blob
sam/bam.c [new file with mode: 0644] blob
sam/bam.h [new file with mode: 0644] blob
sam/bam_aux.c [new file with mode: 0644] blob
sam/bam_color.c [new file with mode: 0644] blob
sam/bam_endian.h [new file with mode: 0644] blob
sam/bam_import.c [new file with mode: 0644] blob
sam/bam_index.c [new file with mode: 0644] blob
sam/bam_lpileup.c [new file with mode: 0644] blob
sam/bam_maqcns.c [new file with mode: 0644] blob
sam/bam_maqcns.h [new file with mode: 0644] blob
sam/bam_mate.c [new file with mode: 0644] blob
sam/bam_md.c [new file with mode: 0644] blob
sam/bam_pileup.c [new file with mode: 0644] blob
sam/bam_plcmd.c [new file with mode: 0644] blob
sam/bam_reheader.c [new file with mode: 0644] blob
sam/bam_rmdup.c [new file with mode: 0644] blob
sam/bam_rmdupse.c [new file with mode: 0644] blob
sam/bam_sort.c [new file with mode: 0644] blob
sam/bam_stat.c [new file with mode: 0644] blob
sam/bam_tview.c [new file with mode: 0644] blob
sam/bamtk.c [new file with mode: 0644] blob
sam/bgzf.c [new file with mode: 0644] blob
sam/bgzf.h [new file with mode: 0644] blob
sam/bgzip.c [new file with mode: 0644] blob
sam/examples/00README.txt [new file with mode: 0644] blob
sam/examples/Makefile [new file with mode: 0644] blob
sam/examples/bam2bed.c [new file with mode: 0644] blob
sam/examples/calDepth.c [new file with mode: 0644] blob
sam/examples/ex1.fa [new file with mode: 0644] blob
sam/examples/ex1.sam.gz [new file with mode: 0644] blob
sam/examples/toy.fa [new file with mode: 0644] blob
sam/examples/toy.sam [new file with mode: 0644] blob
sam/faidx.c [new file with mode: 0644] blob
sam/faidx.h [new file with mode: 0644] blob
sam/glf.c [new file with mode: 0644] blob
sam/glf.h [new file with mode: 0644] blob
sam/kaln.c [new file with mode: 0644] blob
sam/kaln.h [new file with mode: 0644] blob
sam/khash.h [new file with mode: 0644] blob
sam/klist.h [new file with mode: 0644] blob
sam/knetfile.c [new file with mode: 0644] blob
sam/knetfile.h [new file with mode: 0644] blob
sam/kseq.h [new file with mode: 0644] blob
sam/ksort.h [new file with mode: 0644] blob
sam/kstring.c [new file with mode: 0644] blob
sam/kstring.h [new file with mode: 0644] blob
sam/misc/Makefile [new file with mode: 0644] blob
sam/misc/blast2sam.pl [new file with mode: 0755] blob
sam/misc/bowtie2sam.pl [new file with mode: 0755] blob
sam/misc/export2sam.pl [new file with mode: 0755] blob
sam/misc/interpolate_sam.pl [new file with mode: 0755] blob
sam/misc/maq2sam.c [new file with mode: 0644] blob
sam/misc/md5.c [new file with mode: 0644] blob
sam/misc/md5.h [new file with mode: 0644] blob
sam/misc/md5fa.c [new file with mode: 0644] blob
sam/misc/novo2sam.pl [new file with mode: 0755] blob
sam/misc/psl2sam.pl [new file with mode: 0755] blob
sam/misc/sam2vcf.pl [new file with mode: 0755] blob
sam/misc/samtools.pl [new file with mode: 0755] blob
sam/misc/soap2sam.pl [new file with mode: 0755] blob
sam/misc/varfilter.py [new file with mode: 0755] blob
sam/misc/wgsim.c [new file with mode: 0644] blob
sam/misc/wgsim_eval.pl [new file with mode: 0755] blob
sam/misc/zoom2sam.pl [new file with mode: 0755] blob
sam/razf.c [new file with mode: 0644] blob
sam/razf.h [new file with mode: 0644] blob
sam/razip.c [new file with mode: 0644] blob
sam/sam.c [new file with mode: 0644] blob
sam/sam.h [new file with mode: 0644] blob
sam/sam_header.c [new file with mode: 0644] blob
sam/sam_header.h [new file with mode: 0644] blob
sam/sam_view.c [new file with mode: 0644] blob
sam/samtools.1 [new file with mode: 0644] blob
sam/samtools.txt [new file with mode: 0644] blob
sam/win32/xcurses.h [new file with mode: 0644] blob
sam/win32/zconf.h [new file with mode: 0644] blob
sam/win32/zlib.h [new file with mode: 0644] blob
simul.h [new file with mode: 0644] blob
simul_mersenne.h [new file with mode: 0644] blob
simulation.cpp [new file with mode: 0644] blob
synthesisRef.cpp [new file with mode: 0644] blob
utils.h [new file with mode: 0644] blob
Debian packaging of rsem