Allowed > 2^31 hits

[rsem.git] / samValidator.cpp

diff --git a/samValidator.cpp b/samValidator.cpp
index e1a2cc8c8aefee07e6c747f5391e5b369063d4ec..5b02ba4c46f41f20884915d7f117c2a3213f49b0 100644 (file)
--- a/samValidator.cpp
+++ b/samValidator.cpp
@@ -9,6 +9,7 @@
 #include "sam/bam.h"
 #include "sam/sam.h"
 
+#include "utils.h"
 #include "my_assert.h"
 
 using namespace std;
@@ -45,7 +46,7 @@ int main(int argc, char* argv[]) {
 
        isValid = true;
 
-       long cnt = 0;
+       HIT_INT_TYPE cnt = 0;
        string cqname(""), qname;
        uint64_t creadlen = 0, readlen;
        bool cispaired = false, ispaired;