X-Git-Url: https://git.donarmstrong.com/?p=rsem.git;a=blobdiff_plain;f=samValidator.cpp;h=5b02ba4c46f41f20884915d7f117c2a3213f49b0;hp=e1a2cc8c8aefee07e6c747f5391e5b369063d4ec;hb=9eef8b58056b7cdaad1b4bdb2b2904d9fc0ff430;hpb=f67ec16ff8add74c17df026f77cf39e5a1aca051

diff --git a/samValidator.cpp b/samValidator.cpp
index e1a2cc8..5b02ba4 100644
--- a/samValidator.cpp
+++ b/samValidator.cpp
@@ -9,6 +9,7 @@
 #include "sam/bam.h"
 #include "sam/sam.h"
 
+#include "utils.h"
 #include "my_assert.h"
 
 using namespace std;
@@ -45,7 +46,7 @@ int main(int argc, char* argv[]) {
 
 	isValid = true;
 
-	long cnt = 0;
+	HIT_INT_TYPE cnt = 0;
 	string cqname(""), qname;
 	uint64_t creadlen = 0, readlen;
 	bool cispaired = false, ispaired;