Added support for DE analysis on multiple conditions via running EBSeq

[rsem.git] / rsem-calculate-expression

diff --git a/rsem-calculate-expression b/rsem-calculate-expression
index edb6fddf5458d3d80da38dc9996d586e902a8b9d..62339cb4aa41b1e43a5da611a8bb110f018cf399 100755 (executable)
--- a/rsem-calculate-expression
+++ b/rsem-calculate-expression
@@ -354,14 +354,10 @@ rsem-calculate-expression
 
 =head1 SYNOPSIS
 
-=over
-
- rsem-calculate-expression [options] upstream_read_file(s) reference_name sample_name
- rsem-calculate-expression [options] --paired-end upstream_read_file(s) downstream_read_file(s) reference_name sample_name
+ rsem-calculate-expression [options] upstream_read_file(s) reference_name sample_name 
+ rsem-calculate-expression [options] --paired-end upstream_read_file(s) downstream_read_file(s) reference_name sample_name 
  rsem-calculate-expression [options] --sam/--bam [--paired-end] input reference_name sample_name
 
-=back
-
 =head1 ARGUMENTS
 
 =over