Refactored wiggle code and added rsem-bam2readdepth program

[rsem.git] / rsem-calculate-expression

diff --git a/rsem-calculate-expression b/rsem-calculate-expression
index 746fb7e510006d9bc238bf5678adddac7c3d83c2..06604d96a8c415b4eaeaf9e74854d6bf772a8d17 100755 (executable)
--- a/rsem-calculate-expression
+++ b/rsem-calculate-expression
@@ -286,6 +286,7 @@ if ($genBamF) {
 
 if ($calcCI) {
     $command = $dir."rsem-run-gibbs $refName $sampleName $sampleToken $BURNIN $CHAINLEN $SAMPLEGAP";
+#    $command .= " -p $nThreads";
     if ($quiet) { $command .= " -q"; }
     print "$command\n";
     $status = system($command);
@@ -660,3 +661,5 @@ Assume the path to the bowtie executables is in the user's PATH environment vari
                            mmliver_paired_end_quals
 
 =cut
+
+#  LocalWords:  usr