]> git.donarmstrong.com Git - papers/h3abionet_hackathon_aug_2016.git/blob - h3abionet_hackathon.Rnw
add h3africa slides
[papers/h3abionet_hackathon_aug_2016.git] / h3abionet_hackathon.Rnw
1 \documentclass[ignorenonframetext]{beamer}
2 \usepackage{fontspec}
3 \setmainfont{FreeSerif}
4 \setsansfont{FreeSans}
5 \setmonofont{FreeMono}
6 \usepackage{url}
7 \usepackage{fancyhdr}
8 \usepackage{graphicx}
9 \usepackage[bf]{caption}
10 \usepackage{rotating}
11 \usepackage{wrapfig}
12 \usepackage{fancybox}
13 \usepackage{booktabs}
14 % \usepackage{multirow}
15 \usepackage{acronym}
16 \usepackage{qrcode}
17 \usepackage[backend=biber,natbib=true,hyperref=true,style=nature]{biblatex}
18 \addbibresource{references.bib}
19 % \usepackage[nomargin,inline,draft]{fixme}
20 % \newcommand{\DLA}[1]{\textcolor{red}{\fxnote{DLA: #1}}}
21 % \usepackage[hyperfigures,bookmarks,colorlinks,citecolor=black,filecolor=black,linkcolor=black,urlcolor=black]{hyperref}
22 \usepackage{texshade}
23 \usepackage{tikz}
24 \usepackage{nameref}
25 \usepackage{zref-xr,zref-user}
26 \renewcommand*{\bibfont}{\tiny}
27
28 % The textpos package is necessary to position textblocks at arbitary 
29 % places on the page.  Use showboxes option to show outlines of textboxes.
30 % \usepackage[absolute]{textpos}
31 \usepackage[absolute,showboxes]{textpos}
32
33 \usepackage{multirow}
34 \usepackage{array}
35
36 \mode<presentation>{ 
37   \usetheme{CambridgeUS}
38   % http://identitystandards.illinois.edu/graphicstandardsmanual/generalguidelines/colors.html
39   \definecolor{ilboldblue}{HTML}{002058}
40   \definecolor{ilboldorange}{HTML}{E87722}
41   \definecolor{ilblue}{HTML}{606EB2}
42   \definecolor{ilorange}{HTML}{D45D00}
43   \setbeamercolor{alerted text}{fg=ilboldorange}
44   \setbeamercolor*{palette primary}{fg=ilblue,bg=ilorange}
45   \setbeamercolor*{palette secondary}{fg=ilblue!20!white,bg=ilorange}
46   \setbeamercolor*{palette tertiary}{bg=ilblue,fg=ilorange}
47   \setbeamercolor*{palette quaternary}{fg=ilblue,bg=ilorange}
48   
49   \setbeamercolor*{sidebar}{fg=ilorange,bg=ilboldblue}
50   
51   \setbeamercolor*{palette sidebar primary}{fg=ilblue!10!white,bg=ilorange}
52   \setbeamercolor*{palette sidebar secondary}{fg=ilorange}
53   \setbeamercolor*{palette sidebar tertiary}{fg=ilblue}
54   \setbeamercolor*{palette sidebar quaternary}{fg=ilorange}
55   
56   % \setbeamercolor*{titlelike}{parent=palette primary}
57   \setbeamercolor{titlelike}{parent=palette primary,fg=ilboldblue,bg=ilorange}
58   \setbeamercolor{frametitle}{fg=ilboldorange,bg=ilblue!80!white}
59   \setbeamercolor{frametitle right}{fg=ilboldblue,bg=ilorange}
60   
61   \setbeamercolor*{separation line}{}
62   \setbeamercolor*{fine separation line}{}
63   \setbeamercovered{transparent}  
64   \logo{\begin{tikzpicture}% Pale figure
65       {\node[opacity=0.5]{\IfFileExists{figures/igb_wordmark.pdf}{\includegraphics[width=2cm,height=0.5cm,keepaspectratio]{figures/igb_wordmark}}{}%
66         };}%
67     \end{tikzpicture}}
68 }
69
70 \title[H3ABionet Hackathon]{H3ABionet Hackathon in Pretoria, South Africa}
71 \author{Don L. Armstrong}
72 \institute[IGB]{Institute for Genomic Biology, University of Illinois, Urbana-Champaign}
73
74 \begin{document}
75
76 \frame[plain]{\titlepage}
77
78 \section{Location}
79
80 \begin{frame}{Pretoria}
81 \end{frame}
82
83 \begin{frame}{Bioinformatics Training Lab}
84 \end{frame}
85
86 \section{Tracks}
87
88 \begin{frame}{People}
89 \end{frame}
90
91 \begin{frame}{Tracks}
92 \end{frame}
93
94 \section{Results}
95
96 \begin{frame}{CWL Pipelines}
97 \end{frame}
98
99 \begin{frame}{Imputation Workflow}
100 \end{frame}
101
102 \begin{frame}{Nova cloud-init structure}
103 \end{frame}
104
105 \end{document}