| 2010-10-19 |
westcott | fixed bug with aligner and longest base. added deunique...
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commit | commitdiff | tree |
| 2010-10-19 |
westcott | fixed phylo.diversity and made trim.seqs with allfiles...
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commit | commitdiff | tree |
| 2010-10-18 |
westcott | fixed unifrac.weighted
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commit | commitdiff | tree |
| 2010-10-18 |
westcott | fixed unifrac.unweighted
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commit | commitdiff | tree |
| 2010-10-18 |
westcott | added ifdefs for extern c
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commit | commitdiff | tree |
| 2010-10-18 |
westcott | testing metastats compile
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commit | commitdiff | tree |
| 2010-10-15 |
westcott | added pipeline commands which involved change to command...
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commit | commitdiff | tree |
| 2010-10-05 |
westcott | paralellized phylo.diversity
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commit | commitdiff | tree |
| 2010-10-04 |
westcott | paralellized rarefaction.single
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commit | commitdiff | tree |
| 2010-10-04 |
westcott | changed name of parse.fastaq command to fastq.info
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commit | commitdiff | tree |
| 2010-09-30 |
westcott | added parse.fastaq command, added permute option to...
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commit | commitdiff | tree |
| 2010-09-28 |
westcott | added distance option to summary.shared
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commit | commitdiff | tree |
| 2010-09-24 |
westcott | added get.lineage and remove.lineage commands
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commit | commitdiff | tree |
| 2010-09-23 |
westcott | fixed order of unifrac commands so that it matches...
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commit | commitdiff | tree |
| 2010-09-23 |
westcott | added cluster.fragments command as well as the nseqs...
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commit | commitdiff | tree |
| 2010-09-21 |
westcott | added mothur executable to cvs
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commit | commitdiff | tree |
| 2010-09-21 |
westcott | added split.groups command
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commit | commitdiff | tree |
| 2010-09-20 |
westcott | changed how we name the make.group groups file, and...
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commit | commitdiff | tree |
| 2010-09-17 |
westcott | bug fixes
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commit | commitdiff | tree |
| 2010-09-17 |
westcott | bug fixes
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commit | commitdiff | tree |
| 2010-09-17 |
westcott | working on megastats
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commit | commitdiff | tree |
| 2010-09-16 |
westcott | initial add of metastats
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commit | commitdiff | tree |
| 2010-09-15 |
westcott | added normalize.shared command
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commit | commitdiff | tree |
| 2010-09-15 |
westcott | added normalize.shared command
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commit | commitdiff | tree |
| 2010-09-15 |
westcott | paralellized summary.shared
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commit | commitdiff | tree |
| 2010-09-09 |
westcott | done testing 1.13.0
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commit | commitdiff | tree |
| 2010-09-08 |
westcott | testing 1.13.0
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commit | commitdiff | tree |
| 2010-09-04 |
westcott | working on testing for 1.13
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commit | commitdiff | tree |
| 2010-09-03 |
westcott | working on testing
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commit | commitdiff | tree |
| 2010-09-01 |
westcott | unifrac parallelization done, changed dist.seqs output...
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commit | commitdiff | tree |
| 2010-09-01 |
westcott | working on unifrac parallelization
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commit | commitdiff | tree |
| 2010-08-31 |
westcott | working on parallelizing unifrac.unweighted.
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commit | commitdiff | tree |
| 2010-08-31 |
westcott | working on parallelizing unifrac.weighted.
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commit | commitdiff | tree |
| 2010-08-30 |
westcott | sped up unifrac unweighted.
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commit | commitdiff | tree |
| 2010-08-30 |
westcott | sped up unifrac weighted.
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commit | commitdiff | tree |
| 2010-08-27 |
westcott | made read.tree not require a groupfile, if one is not...
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commit | commitdiff | tree |
| 2010-08-27 |
westcott | fixed phylo.diversity
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commit | commitdiff | tree |
| 2010-08-27 |
westcott | fixed phylo.diversity
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commit | commitdiff | tree |
| 2010-08-26 |
westcott | added clearcut source to mothur, fixed mislabeled sharedcalcs
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commit | commitdiff | tree |
| 2010-08-26 |
westcott | added clearcut source to mothur, fixed mislabeled sharedcalcs
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commit | commitdiff | tree |
| 2010-08-24 |
westcott | added sharedRabundFloatVector class to represent the...
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commit | commitdiff | tree |
| 2010-08-24 |
westcott | moved utilities out of mothur.h and into mothurOut...
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commit | commitdiff | tree |
| 2010-08-23 |
westcott | filter.seqs bug change
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commit | commitdiff | tree |
| 2010-08-23 |
westcott | numSeqs passing fix
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commit | commitdiff | tree |
| 2010-08-20 |
westcott | pre.cluster
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commit | commitdiff | tree |
| 2010-08-20 |
westcott | pre.cluster
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commit | commitdiff | tree |
| 2010-08-20 |
westcott | modified precluster to use less memory.
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commit | commitdiff | tree |
| 2010-08-20 |
westcott | changed file divide for trim.seqs
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commit | commitdiff | tree |
| 2010-08-19 |
westcott | changed how we break up the files on parallelized commands...
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commit | commitdiff | tree |
| 2010-08-19 |
westcott | modified calculators to use doubles, added numotu and...
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commit | commitdiff | tree |
| 2010-08-06 |
westcott | added oldfasta and column parameter to dist.seqs so...
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commit | commitdiff | tree |
| 2010-08-06 |
westcott | added versioning info to all shortcut files mothur...
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commit | commitdiff | tree |
| 2010-08-05 |
westcott | added summary, collect, and scale parameters to phylo...
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commit | commitdiff | tree |
| 2010-08-05 |
westcott | fixed bug with creation of .tree.sum file
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commit | commitdiff | tree |
| 2010-08-03 |
westcott | added countgaps parameter to chop.seqs command
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commit | commitdiff | tree |
| 2010-08-03 |
westcott | modified the engine to extract the path of mothur executable...
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commit | commitdiff | tree |
| 2010-08-02 |
westcott | fixed bug with phylo.diversity. not calculating as...
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commit | commitdiff | tree |
| 2010-07-30 |
westcott | changes for 1.12.2
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commit | commitdiff | tree |
| 2010-07-30 |
westcott | changes for 1.12.2
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commit | commitdiff | tree |
| 2010-07-29 |
westcott | 1.12.1
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commit | commitdiff | tree |
| 2010-07-28 |
westcott | some bug fixes
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commit | commitdiff | tree |
| 2010-07-23 |
westcott | 1.12.0
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commit | commitdiff | tree |
| 2010-07-22 |
westcott | fixes while testing 1.12.0
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commit | commitdiff | tree |
| 2010-07-20 |
westcott | added tempdefault to set.dir and fixed bug with padding...
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commit | commitdiff | tree |
| 2010-07-19 |
westcott | added ordergroup parameter to read.otu
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commit | commitdiff | tree |
| 2010-07-19 |
westcott | added compile time default path
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commit | commitdiff | tree |
| 2010-07-19 |
westcott | added fasta, qfile, trim, accnos and sfftxt parameter...
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commit | commitdiff | tree |
| 2010-07-15 |
westcott | sffinfo command is working
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commit | commitdiff | tree |
| 2010-07-15 |
westcott | sffinfo command is working
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commit | commitdiff | tree |
| 2010-07-15 |
westcott | working on sffinfo
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commit | commitdiff | tree |
| 2010-07-14 |
westcott | working on sffinfo command.
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commit | commitdiff | tree |
| 2010-07-14 |
westcott | working on sffinfo command.
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commit | commitdiff | tree |
| 2010-07-14 |
westcott | working on sffinfo command.
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commit | commitdiff | tree |
| 2010-07-14 |
westcott | started work on sffinfo command. fixed bug across...
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commit | commitdiff | tree |
| 2010-07-06 |
westcott | fixed trim.seqs bug
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commit | commitdiff | tree |
| 2010-07-06 |
westcott | rechecking in
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commit | commitdiff | tree |
| 2010-07-06 |
westcott | trim.seqs couts
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commit | commitdiff | tree |
| 2010-06-30 |
westcott | modified trim.seqs to split by primer name if primer...
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commit | commitdiff | tree |
| 2010-06-28 |
westcott | added groups option to get.oturep command
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commit | commitdiff | tree |
| 2010-06-24 |
westcott | created blank accnos in chimera commands if no seqs...
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commit | commitdiff | tree |
| 2010-06-23 |
westcott | fixed bug with cluster class. when we added the change...
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commit | commitdiff | tree |
| 2010-06-23 |
westcott | fixed cluster.split with average method
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commit | commitdiff | tree |
| 2010-06-22 |
westcott | finished get.relabund command
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commit | commitdiff | tree |
| 2010-06-22 |
westcott | finished get.relabund command
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commit | commitdiff | tree |
| 2010-06-22 |
westcott | added mpi code to cluster.split command
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commit | commitdiff | tree |
| 2010-06-22 |
westcott | added mpi code to cluster.split command
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commit | commitdiff | tree |
| 2010-06-21 |
westcott | added degap.seqs command
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commit | commitdiff | tree |
| 2010-06-21 |
westcott | modified chimera commands to process multiple fasta...
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commit | commitdiff | tree |
| 2010-06-18 |
westcott | removed blast files generated by chimera.slayer, altered...
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commit | commitdiff | tree |
| 2010-06-18 |
westcott | fixed problem with trim.seqs writing over files if...
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commit | commitdiff | tree |
| 2010-06-18 |
westcott | fixed problem with chimera.slayer realigner
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commit | commitdiff | tree |
| 2010-06-17 |
westcott | changes for 1.11
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commit | commitdiff | tree |
| 2010-06-17 |
westcott | changes while testing 1.11
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commit | commitdiff | tree |
| 2010-06-16 |
westcott | fixes while testing
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commit | commitdiff | tree |
| 2010-06-15 |
westcott | changed how we count sequences in a fastafile to allow...
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commit | commitdiff | tree |
| 2010-06-15 |
westcott | changed how we count sequences in a fastafile to allow...
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commit | commitdiff | tree |
| 2010-06-15 |
westcott | final commit before testing 1.11
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commit | commitdiff | tree |
| 2010-06-14 |
westcott | modified chop.seqs
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commit | commitdiff | tree |
| 2010-06-14 |
westcott | fixed read.tree so that it can read trees generated...
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commit | commitdiff | tree |
| 2010-06-14 |
westcott | added fasta method to cluster.split
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commit | commitdiff | tree |
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