| 2010-08-27 |
westcott | made read.tree not require a groupfile, if one is not...
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commit | commitdiff | tree |
| 2010-08-27 |
westcott | fixed phylo.diversity
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commit | commitdiff | tree |
| 2010-08-27 |
westcott | fixed phylo.diversity
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commit | commitdiff | tree |
| 2010-08-26 |
westcott | added clearcut source to mothur, fixed mislabeled sharedcalcs
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commit | commitdiff | tree |
| 2010-08-26 |
westcott | added clearcut source to mothur, fixed mislabeled sharedcalcs
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commit | commitdiff | tree |
| 2010-08-24 |
westcott | added sharedRabundFloatVector class to represent the...
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commit | commitdiff | tree |
| 2010-08-24 |
westcott | moved utilities out of mothur.h and into mothurOut...
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commit | commitdiff | tree |
| 2010-08-23 |
westcott | filter.seqs bug change
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commit | commitdiff | tree |
| 2010-08-23 |
westcott | numSeqs passing fix
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commit | commitdiff | tree |
| 2010-08-20 |
westcott | pre.cluster
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commit | commitdiff | tree |
| 2010-08-20 |
westcott | pre.cluster
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commit | commitdiff | tree |
| 2010-08-20 |
westcott | modified precluster to use less memory.
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commit | commitdiff | tree |
| 2010-08-20 |
westcott | changed file divide for trim.seqs
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commit | commitdiff | tree |
| 2010-08-19 |
westcott | changed how we break up the files on parallelized commands...
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commit | commitdiff | tree |
| 2010-08-19 |
westcott | modified calculators to use doubles, added numotu and...
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commit | commitdiff | tree |
| 2010-08-06 |
westcott | added oldfasta and column parameter to dist.seqs so...
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commit | commitdiff | tree |
| 2010-08-06 |
westcott | added versioning info to all shortcut files mothur...
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commit | commitdiff | tree |
| 2010-08-05 |
westcott | added summary, collect, and scale parameters to phylo...
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commit | commitdiff | tree |
| 2010-08-05 |
westcott | fixed bug with creation of .tree.sum file
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commit | commitdiff | tree |
| 2010-08-03 |
westcott | added countgaps parameter to chop.seqs command
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commit | commitdiff | tree |
| 2010-08-03 |
westcott | modified the engine to extract the path of mothur executable...
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commit | commitdiff | tree |
| 2010-08-02 |
westcott | fixed bug with phylo.diversity. not calculating as...
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commit | commitdiff | tree |
| 2010-07-30 |
westcott | changes for 1.12.2
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commit | commitdiff | tree |
| 2010-07-30 |
westcott | changes for 1.12.2
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commit | commitdiff | tree |
| 2010-07-29 |
westcott | 1.12.1
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commit | commitdiff | tree |
| 2010-07-28 |
westcott | some bug fixes
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commit | commitdiff | tree |
| 2010-07-23 |
westcott | 1.12.0
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commit | commitdiff | tree |
| 2010-07-22 |
westcott | fixes while testing 1.12.0
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commit | commitdiff | tree |
| 2010-07-20 |
westcott | added tempdefault to set.dir and fixed bug with padding...
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commit | commitdiff | tree |
| 2010-07-19 |
westcott | added ordergroup parameter to read.otu
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commit | commitdiff | tree |
| 2010-07-19 |
westcott | added compile time default path
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commit | commitdiff | tree |
| 2010-07-19 |
westcott | added fasta, qfile, trim, accnos and sfftxt parameter...
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commit | commitdiff | tree |
| 2010-07-15 |
westcott | sffinfo command is working
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commit | commitdiff | tree |
| 2010-07-15 |
westcott | sffinfo command is working
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commit | commitdiff | tree |
| 2010-07-15 |
westcott | working on sffinfo
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commit | commitdiff | tree |
| 2010-07-14 |
westcott | working on sffinfo command.
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commit | commitdiff | tree |
| 2010-07-14 |
westcott | working on sffinfo command.
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commit | commitdiff | tree |
| 2010-07-14 |
westcott | working on sffinfo command.
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commit | commitdiff | tree |
| 2010-07-14 |
westcott | started work on sffinfo command. fixed bug across...
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commit | commitdiff | tree |
| 2010-07-06 |
westcott | fixed trim.seqs bug
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commit | commitdiff | tree |
| 2010-07-06 |
westcott | rechecking in
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commit | commitdiff | tree |
| 2010-07-06 |
westcott | trim.seqs couts
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commit | commitdiff | tree |
| 2010-06-30 |
westcott | modified trim.seqs to split by primer name if primer...
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commit | commitdiff | tree |
| 2010-06-28 |
westcott | added groups option to get.oturep command
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commit | commitdiff | tree |
| 2010-06-24 |
westcott | created blank accnos in chimera commands if no seqs...
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commit | commitdiff | tree |
| 2010-06-23 |
westcott | fixed bug with cluster class. when we added the change...
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commit | commitdiff | tree |
| 2010-06-23 |
westcott | fixed cluster.split with average method
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commit | commitdiff | tree |
| 2010-06-22 |
westcott | finished get.relabund command
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commit | commitdiff | tree |
| 2010-06-22 |
westcott | finished get.relabund command
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commit | commitdiff | tree |
| 2010-06-22 |
westcott | added mpi code to cluster.split command
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commit | commitdiff | tree |
| 2010-06-22 |
westcott | added mpi code to cluster.split command
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commit | commitdiff | tree |
| 2010-06-21 |
westcott | added degap.seqs command
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commit | commitdiff | tree |
| 2010-06-21 |
westcott | modified chimera commands to process multiple fasta...
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commit | commitdiff | tree |
| 2010-06-18 |
westcott | removed blast files generated by chimera.slayer, altered...
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commit | commitdiff | tree |
| 2010-06-18 |
westcott | fixed problem with trim.seqs writing over files if...
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commit | commitdiff | tree |
| 2010-06-18 |
westcott | fixed problem with chimera.slayer realigner
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commit | commitdiff | tree |
| 2010-06-17 |
westcott | changes for 1.11
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commit | commitdiff | tree |
| 2010-06-17 |
westcott | changes while testing 1.11
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commit | commitdiff | tree |
| 2010-06-16 |
westcott | fixes while testing
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commit | commitdiff | tree |
| 2010-06-15 |
westcott | changed how we count sequences in a fastafile to allow...
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commit | commitdiff | tree |
| 2010-06-15 |
westcott | changed how we count sequences in a fastafile to allow...
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commit | commitdiff | tree |
| 2010-06-15 |
westcott | final commit before testing 1.11
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commit | commitdiff | tree |
| 2010-06-14 |
westcott | modified chop.seqs
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commit | commitdiff | tree |
| 2010-06-14 |
westcott | fixed read.tree so that it can read trees generated...
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commit | commitdiff | tree |
| 2010-06-14 |
westcott | added fasta method to cluster.split
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commit | commitdiff | tree |
| 2010-06-14 |
westcott | fixed bug in cluster.split
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commit | commitdiff | tree |
| 2010-06-14 |
westcott | fixed pintail bug
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commit | commitdiff | tree |
| 2010-06-11 |
westcott | fixed bug in cluster.split with classify method
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commit | commitdiff | tree |
| 2010-06-10 |
westcott | committing so I can work on the other machine
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commit | commitdiff | tree |
| 2010-06-09 |
westcott | changes to blastdb to make filenames given to blast...
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commit | commitdiff | tree |
| 2010-06-09 |
westcott | changes to blastdb to make filenames given to blast...
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commit | commitdiff | tree |
| 2010-06-04 |
westcott | sped up splitting of distance file by 2.5 times by...
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commit | commitdiff | tree |
| 2010-06-03 |
westcott | fixed cluster.split command
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commit | commitdiff | tree |
| 2010-06-02 |
westcott | added sort parameter to get.otulist
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commit | commitdiff | tree |
| 2010-06-02 |
westcott | added taxonomy file to list of files list.seqs, get...
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commit | commitdiff | tree |
| 2010-06-02 |
westcott | added classify.otu command
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commit | commitdiff | tree |
| 2010-06-02 |
westcott | added classify.otu command
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commit | commitdiff | tree |
| 2010-06-01 |
westcott | changed the daughterLevels in classifiers summary file...
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commit | commitdiff | tree |
| 2010-06-01 |
westcott | latest version
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commit | commitdiff | tree |
| 2010-05-28 |
westcott | finished cluster.split adding classify method.
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commit | commitdiff | tree |
| 2010-05-28 |
westcott | changed hard parameter in cluster commands
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commit | commitdiff | tree |
| 2010-05-27 |
westcott | fixed project
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commit | commitdiff | tree |
| 2010-05-27 |
westcott | changes to chop.seqs
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commit | commitdiff | tree |
| 2010-05-20 |
westcott | cluster.split command
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commit | commitdiff | tree |
| 2010-05-20 |
westcott | fixed phylip convert for cluster.split command
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commit | commitdiff | tree |
| 2010-05-20 |
westcott | added cluster.split command
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commit | commitdiff | tree |
| 2010-05-18 |
westcott | added split.abund comand
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commit | commitdiff | tree |
| 2010-05-17 |
westcott | change to phylo.diversity to make output = total branch...
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commit | commitdiff | tree |
| 2010-05-14 |
westcott | 1.10.0
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commit | commitdiff | tree |
| 2010-05-12 |
westcott | modified freq parameter be a percentage of numSeqs...
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commit | commitdiff | tree |
| 2010-05-11 |
westcott | added clearcut command
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commit | commitdiff | tree |
| 2010-05-10 |
westcott | added chop.seqs command
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commit | commitdiff | tree |
| 2010-05-10 |
westcott | fixed problem with class.fy.seqs where group totals...
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commit | commitdiff | tree |
| 2010-05-10 |
westcott | added make.group command
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commit | commitdiff | tree |
| 2010-05-10 |
westcott | worked on trim.seqs
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commit | commitdiff | tree |
| 2010-05-10 |
westcott | worked on trim.seqs
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commit | commitdiff | tree |
| 2010-05-07 |
westcott | changed confidence scores calculation in bayesian
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commit | commitdiff | tree |
| 2010-05-07 |
westcott | modified trim.seqs to account for primers of different...
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commit | commitdiff | tree |
| 2010-05-07 |
westcott | added diffs to trim.seqs
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commit | commitdiff | tree |
| 2010-05-07 |
westcott | working on trim.seqs
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commit | commitdiff | tree |
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