- CommandParameter psff("sff", "InputTypes", "", "", "sffFastQFile", "sffFastQFile", "none","sra",false,false); parameters.push_back(psff);
- CommandParameter pgroup("group", "InputTypes", "", "", "groupOligos", "none", "none","sra",false,false); parameters.push_back(pgroup);
- CommandParameter poligos("oligos", "InputTypes", "", "", "groupOligos", "none", "none","sra",false,false); parameters.push_back(poligos);
- CommandParameter pfile("file", "InputTypes", "", "", "sffFastQFile", "sffFastQFile", "none","sra",false,false); parameters.push_back(pfile);
- CommandParameter pfastq("fastq", "InputTypes", "", "", "sffFastQFile", "sffFastQFile", "none","sra",false,false); parameters.push_back(pfastq);
+ CommandParameter psff("sff", "InputTypes", "", "", "sffFastQFile", "sffFastQFile", "none","xml",false,false); parameters.push_back(psff);
+ CommandParameter pgroup("group", "InputTypes", "", "", "groupOligos", "none", "none","",false,false); parameters.push_back(pgroup);
+ CommandParameter poligos("oligos", "InputTypes", "", "", "groupOligos", "none", "none","",false,false); parameters.push_back(poligos);
+ CommandParameter pfile("file", "InputTypes", "", "", "sffFastQFile", "sffFastQFile", "none","xml",false,false); parameters.push_back(pfile);
+ CommandParameter pfastq("fastq", "InputTypes", "", "", "sffFastQFile", "sffFastQFile", "none","xml",false,false); parameters.push_back(pfastq);