From: pschloss <pschloss>
Date: Thu, 4 Feb 2010 15:57:46 +0000 (+0000)
Subject: pat's ../ bug fix - test
X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=commitdiff_plain;h=5dc27f45958c8c57c79e85c369121e92d70f9ca5

pat's ../ bug fix - test
---

diff --git a/alignmentdb.cpp b/alignmentdb.cpp
index 52eedf8..4b89acb 100644
--- a/alignmentdb.cpp
+++ b/alignmentdb.cpp
@@ -17,7 +17,7 @@
 AlignmentDB::AlignmentDB(string fastaFileName, string method, int kmerSize, float gapOpen, float gapExtend, float match, float misMatch){		//	This assumes that the template database is in fasta format, may 
 	try {											//	need to alter this in the future?
 		longest = 0;
-		
+		cout << longest;
 		ifstream fastaFile;
 		openInputFile(fastaFileName, fastaFile);