added parse.fastaq command, added permute option to venn command, fixed bug with...

[mothur.git] / venncommand.h

diff --git a/venncommand.h b/venncommand.h
index a159356e44466f13913242128be47c0377e7806d..f6bdf395e20eeba3af9c7c7b4bba206daa9ebe56 100644 (file)
--- a/venncommand.h
+++ b/venncommand.h
@@ -37,13 +37,17 @@ private:
        vector<Calculator*> vennCalculators;    
        ValidCalculators* validCalculator;
        vector<SharedRAbundVector*> lookup;
+       set< set<int> > combosOfFour;
        SAbundVector* sabund;
        int abund;
        
-       bool abort, allLines, nseqs;
+       bool abort, allLines, nseqs, perm;
        set<string> labels; //holds labels to be used
        string format, groups, calc, label, outputDir;
        vector<string> Estimators, Groups;
+       
+       set< set<int> > findCombinations(int);
+       int getCombos(set<int>, set< set<int> >&);
 
 
 };