added concensus command and updated calcs

[mothur.git] / validparameter.cpp

diff --git a/validparameter.cpp b/validparameter.cpp
index 3fbf307b69918626e097e2e61a11cfcf54244bb4..4234d2dc65375ae5c2c56b75814494c15b566dab 100644 (file)
--- a/validparameter.cpp
+++ b/validparameter.cpp
@@ -247,7 +247,7 @@ void ValidParameters::initCommandParameters() {
                string collectsingleArray[] =  {"freq","line","label","calc","abund"};
                commandParameters["collect.single"] = addParameters(collectsingleArray, sizeof(collectsingleArray)/sizeof(string));
 
-               string collectsharedArray[] =  {"jumble","freq","line","label","calc","groups"};
+               string collectsharedArray[] =  {"freq","line","label","calc","groups"};
                commandParameters["collect.shared"] = addParameters(collectsharedArray, sizeof(collectsharedArray)/sizeof(string));
 
                string getgroupArray[] =  {};
@@ -271,7 +271,7 @@ void ValidParameters::initCommandParameters() {
                string summarysingleArray[] =  {"line","label","calc","abund"};
                commandParameters["summary.single"] = addParameters(summarysingleArray, sizeof(summarysingleArray)/sizeof(string));
 
-               string summarysharedArray[] =  {"jumble","line","label","calc","groups"};
+               string summarysharedArray[] =  {"line","label","calc","groups"};
                commandParameters["summary.shared"] = addParameters(summarysharedArray, sizeof(summarysharedArray)/sizeof(string));
 
                string parsimonyArray[] =  {"random","groups","iters"};
@@ -301,6 +301,9 @@ void ValidParameters::initCommandParameters() {
                string bootstrapArray[] =  {"line","label","calc","groups","iters"};
                commandParameters["bootstrap.shared"] = addParameters(bootstrapArray, sizeof(bootstrapArray)/sizeof(string));
                
+               string concensusArray[] =  {};
+               commandParameters["concensus"] = addParameters(concensusArray, sizeof(concensusArray)/sizeof(string));
+               
                string quitArray[] = {};
                commandParameters["quit"] = addParameters(quitArray, sizeof(quitArray)/sizeof(string));