adding treeclimber and unifrac pieces

[mothur.git] / validcommands.cpp

diff --git a/validcommands.cpp b/validcommands.cpp
index 734e0ce697a5dff86261ef2451d2fbcdd323b0a0..8f06fefee54330386e9fed5109603e1a2335d1e9 100644 (file)
--- a/validcommands.cpp
+++ b/validcommands.cpp
@@ -16,9 +16,10 @@ ValidCommands::ValidCommands() {
        
                commands["read.dist"]                   = "read.dist"; 
                commands["read.otu"]                    = "read.otu";
-       //      commands["read.tree"]                   = "read.tree"; 
+               commands["read.tree"]                   = "read.tree"; 
                commands["cluster"]                             = "cluster"; 
                commands["deconvolute"]                 = "deconvolute"; 
+               commands["parsimony"]                   = "parsimony";
                commands["help"]                                = "help"; 
                commands["quit"]                                = "quit"; 
                commands["collect.single"]              = "collect.single"; 
@@ -27,6 +28,9 @@ ValidCommands::ValidCommands() {
                commands["rarefaction.shared"]  = "rarefaction.shared"; 
                commands["summary.single"]              = "summary.single"; 
                commands["summary.shared"]              = "summary.shared"; 
+               commands["unifrac.weighted"]    = "unifrac.weighted"; 
+               commands["unifrac.unweighted"]  = "unifrac.unweighted"; 
+
                                
        }
        catch(exception& e) {