X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=validcommands.cpp;h=8f06fefee54330386e9fed5109603e1a2335d1e9;hp=734e0ce697a5dff86261ef2451d2fbcdd323b0a0;hb=d037597badc8d18e235c59f0c1114180edb7f98f;hpb=58cf1d08fee8c64334979075fa57bcafb035a2ed

diff --git a/validcommands.cpp b/validcommands.cpp
index 734e0ce..8f06fef 100644
--- a/validcommands.cpp
+++ b/validcommands.cpp
@@ -16,9 +16,10 @@ ValidCommands::ValidCommands() {
 	
 		commands["read.dist"]			= "read.dist"; 
 		commands["read.otu"]			= "read.otu";
-	//	commands["read.tree"]			= "read.tree"; 
+		commands["read.tree"]			= "read.tree"; 
 		commands["cluster"]				= "cluster"; 
 		commands["deconvolute"]			= "deconvolute"; 
+		commands["parsimony"]			= "parsimony";
 		commands["help"]				= "help"; 
 		commands["quit"]				= "quit"; 
 		commands["collect.single"]		= "collect.single"; 
@@ -27,6 +28,9 @@ ValidCommands::ValidCommands() {
 		commands["rarefaction.shared"]	= "rarefaction.shared"; 
 		commands["summary.single"]		= "summary.single"; 
 		commands["summary.shared"]		= "summary.shared"; 
+		commands["unifrac.weighted"]	= "unifrac.weighted"; 
+		commands["unifrac.unweighted"]	= "unifrac.unweighted"; 
+
 				
 	}
 	catch(exception& e) {