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[mothur.git] / validcalculator.h

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+#ifndef VALIDCALCULATOR_H
+#define VALIDCALCULATOR_H
+
+/*
+ *  validcalculator.h
+ *  Dotur
+ *
+ *  Created by Sarah Westcott on 1/5/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+#include "mothur.h"
+#include "mothurout.h"
+
+//This class contains a list of all valid calculators in Mothur.  
+//It has a function which will tell you if your calculator is valid for the given parameter.
+//When adding a new calculator you must add it to the valid list.
+
+
+class ValidCalculators {
+       public:
+               ValidCalculators();
+               ~ValidCalculators();
+               bool isValidCalculator(string, string);
+               void printCalc(string, ostream&);
+               string printCalc(string);
+               void printCitations(vector<string>);
+               
+       private:
+               map<string, string> single;
+               map<string, string> shared;
+               map<string, string> rarefaction;
+               map<string, string> summary;
+               map<string, string> sharedrarefaction;
+               map<string, string> sharedsummary;
+               map<string, string> vennsingle;
+               map<string, string> vennshared;
+               map<string, string> treegroup;
+               map<string, string> matrix;
+               map<string, string> heat;
+               map<string, string> boot;
+               map<string, string> distance;
+               map<string, string>::iterator it;
+               set<string> allCalcs;
+               
+               void initialSingle();
+               void initialShared();
+               void initialRarefaction();
+               void initialSharedRarefact();
+               void initialSummary();
+               void initialSharedSummary();
+               void initialVennSingle();
+               void initialVennShared();
+               void initialTreeGroups();
+               void initialMatrix();
+               void initialBoot();
+               void initialDistance();
+               void initialHeat();
+               
+               MothurOut* m;
+};
+
+#endif