added uchime_src folder. added biom parameter to make.shared. added biom as a current...

[mothur.git] / uchime_src / counters.h

diff --git a/uchime_src/counters.h b/uchime_src/counters.h
new file mode 100644 (file)
index 0000000..a433cc8
--- /dev/null
+++ b/uchime_src/counters.h
@@ -0,0 +1,39 @@
+C(Search)\r
+C(SearchBlast)\r
+C(HotHits)\r
+C(HotHits2)\r
+C(WindexAccepts)\r
+C(WindexRejects)\r
+C(AlnAccepts)\r
+C(AlnRejects)\r
+C(Seqs)\r
+C(FilterAccepts)\r
+C(FilterRejects)\r
+C(DiagRejects)\r
+C(DPTooBig)\r
+C(HotHitCut)\r
+C(FastRejects)\r
+C(FastRejects2)\r
+C(Step)\r
+C(HSPConflict)\r
+C(DPArea)\r
+C(DPArea2)\r
+C(DPArea3)\r
+C(DPArea4)\r
+C(DPArea5)\r
+C(HSPIdRejects)\r
+C(NoHSPRejects)\r
+C(NoHSPAccepts)\r
+C(BandRejects)\r
+C(FractIdBestSeg)\r
+C(FractIdHSPs)\r
+C(Excludes)\r
+C(NonExcludes)\r
+C(AlignQueryToSeed)\r
+C(PWA_Align)\r
+C(HitExtends)\r
+C(FailedExtends)\r
+C(HitExtendLetters)\r
+C(FailedExtendLetters)\r
+C(AddWords)\r
+C(AddWordGrows)\r