fixed bug with shhh.flow from file path name in write functions, added "smart" featur...

[mothur.git] / trimseqscommand.cpp

diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp
index 213e241ccfc6ee8feeb6c34ed9b589343c7c71d1..dd3427b9a9733285e5e793f78cabe5bdc3ed1cf3 100644 (file)
--- a/trimseqscommand.cpp
+++ b/trimseqscommand.cpp
@@ -292,6 +292,11 @@ TrimSeqsCommand::TrimSeqsCommand(string option)  {
                                m->mothurOut("You didn't set any options... quiting command."); m->mothurOutEndLine();
                                abort = true;
                        }
+                       
+                       if (nameFile == "") {
+                               vector<string> files; files.push_back(fastaFile);
+                               parser.getNameFile(files);
+                       }
                }
 
        }