created mothurOut class to handle logfiles

[mothur.git] / treegroupscommand.h

diff --git a/treegroupscommand.h b/treegroupscommand.h
index 3f2822cfae2abe2929b8ac8f2b94b0e5b9236503..899716c6055b0dc12cbe493fc1ff3e5b8170d769 100644 (file)
--- a/treegroupscommand.h
+++ b/treegroupscommand.h
@@ -67,8 +67,8 @@ private:
 
        bool abort, allLines;
        set<string> labels; //holds labels to be used
-       string phylipfile, columnfile, namefile, calc, groups, label;
-       vector<string>  Estimators, Groups; //holds estimators to be used
+       string phylipfile, columnfile, namefile, calc, groups, label, outputDir;
+       vector<string>  Estimators, Groups, outputNames; //holds estimators to be used
        
        //if the users enters label "0.06" and there is no "0.06" in their file use the next lowest label.
        void process(vector<SharedRAbundVector*>);