fixed bug with shhh.flow from file path name in write functions, added "smart" featur...

[mothur.git] / summarytaxcommand.cpp

diff --git a/summarytaxcommand.cpp b/summarytaxcommand.cpp
index a19986aba92ffeae80d3786c2322dc3d7d5bb461..ffa304102b95570669e4e977a9f4859b18c24c71 100644 (file)
--- a/summarytaxcommand.cpp
+++ b/summarytaxcommand.cpp
@@ -157,6 +157,12 @@ SummaryTaxCommand::SummaryTaxCommand(string option)  {
                                outputDir = ""; 
                                outputDir += m->hasPath(taxfile); //if user entered a file with a path then preserve it 
                        }
+                       
+                       if (namefile == "") {
+                               vector<string> files; files.push_back(taxfile);
+                               parser.getNameFile(files);
+                       }
+                       
                }
        }
        catch(exception& e) {