fixed bug with shhh.flow from file path name in write functions, added "smart" featur...

[mothur.git] / subsamplecommand.cpp

diff --git a/subsamplecommand.cpp b/subsamplecommand.cpp
index fe9e93423969796187dd59452f7e3a3496d4ee57..c352feb099a83879bae9e1aca0f35d5bfe56e691 100644 (file)
--- a/subsamplecommand.cpp
+++ b/subsamplecommand.cpp
@@ -255,6 +255,10 @@ SubSampleCommand::SubSampleCommand(string option) {
                        if ((groupfile != "") && ((fastafile != "") && (listfile != ""))) { 
                                m->mothurOut("A new group file can only be made from the subsample of a listfile or fastafile, not both. Please correct."); m->mothurOutEndLine(); abort = true; }
                        
+                       if ((fastafile != "") && (namefile == "")) {
+                               vector<string> files; files.push_back(fastafile);
+                               parser.getNameFile(files);
+                       }
                }
 
        }