changes while testing

[mothur.git] / splitmatrix.cpp

diff --git a/splitmatrix.cpp b/splitmatrix.cpp
index 2e8b9055eb117f02596864cd35289d92ea3a4a87..f6b5c4d81cf5446adc5e5253808380be7ebbf28d 100644 (file)
--- a/splitmatrix.cpp
+++ b/splitmatrix.cpp
@@ -182,7 +182,7 @@ int SplitMatrix::createDistanceFilesFromTax(map<string, int>& seqGroup, int numG
                }
                
                copyGroups.clear();
-               
+        
                //process each distance file
                for (int i = 0; i < numGroups; i++) { 
                        
@@ -207,6 +207,9 @@ int SplitMatrix::createDistanceFilesFromTax(map<string, int>& seqGroup, int numG
             else { m->mothurRemove((countfile + "." + toString(i) + ".temp")); }
                }
         
+        //restore old fasta file name since dist.seqs overwrites it with the temp files
+        m->setFastaFile(fastafile);
+        
         vector<string> tempDistFiles;    
         for(int i=0;i<numGroups;i++){
             if (outputDir == "") { outputDir = m->hasPath(fastafile); }