X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=splitmatrix.cpp;h=f6b5c4d81cf5446adc5e5253808380be7ebbf28d;hp=2e8b9055eb117f02596864cd35289d92ea3a4a87;hb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;hpb=70491a12902e89b85cfa6b44a7b7fbe066ee2ac1

diff --git a/splitmatrix.cpp b/splitmatrix.cpp
index 2e8b905..f6b5c4d 100644
--- a/splitmatrix.cpp
+++ b/splitmatrix.cpp
@@ -182,7 +182,7 @@ int SplitMatrix::createDistanceFilesFromTax(map<string, int>& seqGroup, int numG
 		}
 		
 		copyGroups.clear();
-		
+        
 		//process each distance file
 		for (int i = 0; i < numGroups; i++) { 
 			
@@ -207,6 +207,9 @@ int SplitMatrix::createDistanceFilesFromTax(map<string, int>& seqGroup, int numG
             else { m->mothurRemove((countfile + "." + toString(i) + ".temp")); }
 		}
         
+        //restore old fasta file name since dist.seqs overwrites it with the temp files
+        m->setFastaFile(fastafile);
+        
         vector<string> tempDistFiles;    
         for(int i=0;i<numGroups;i++){
             if (outputDir == "") { outputDir = m->hasPath(fastafile); }