for (int i = 0; i < thisSeqsGroups.size(); i++) {
if (m->inUsersGroups(thisSeqsGroups[i], Groups)) { //if this sequence belongs to a group we want them print
seq.printSequence(*(ffiles[thisSeqsGroups[i]]));
- int numSeqs = ct.getGroupCount(seq.getName(), Groups[i]);
+ int numSeqs = ct.getGroupCount(seq.getName(), thisSeqsGroups[i]);
(*(cfiles[thisSeqsGroups[i]])) << seq.getName() << '\t' << numSeqs << '\t' << numSeqs << endl;
}
}