Initial revision

[mothur.git] / sharedsorabund.cpp

diff --git a/sharedsorabund.cpp b/sharedsorabund.cpp
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+/*
+ *  sharedsorabund.cpp
+ *  Dotur
+ *
+ *  Created by Sarah Westcott on 1/8/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+#include "sharedsorabund.h"
+
+/***********************************************************************/
+
+EstOutput SharedSorAbund::getValues(SharedRAbundVector* shared1, SharedRAbundVector* shared2) {
+       try {
+               EstOutput UVest;
+               UVest.resize(2,0);
+               data.resize(1,0);
+               
+               UVest = uv->getUVest(shared1, shared2);
+               
+               //UVest[0] is Uest, UVest[1] is Vest
+               data[0] = (2 * UVest[0] * UVest[1]) / ((float)(UVest[0] + UVest[1]));
+               
+               if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
+               
+               return data;
+       }
+       catch(exception& e) {
+               cout << "Standard Error: " << e.what() << " has occurred in the SharedSorAbund class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               exit(1);
+       }
+       catch(...) {
+               cout << "An unknown error has occurred in the SharedSorAbund class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               exit(1);
+       }       
+}
+
+/***********************************************************************/
+