Revert to previous commit

[mothur.git] / sharedjabund.cpp

diff --git a/sharedjabund.cpp b/sharedjabund.cpp
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+/*
+ *  sharedjabund.cpp
+ *  Dotur
+ *
+ *  Created by Sarah Westcott on 1/8/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+#include "sharedjabund.h"
+
+/***********************************************************************/
+
+EstOutput JAbund::getValues(vector<SharedRAbundVector*> shared) {
+       try {
+               EstOutput UVest;
+               UVest.resize(2,0);
+               data.resize(1,0);
+               
+               UVest = uv->getUVest(shared);
+               
+               //UVest[0] is Uest UVest[1] is Vest
+               data[0] = 1.0-(UVest[0] * UVest[1]) / ((float)(UVest[0] + UVest[1] - (UVest[0] * UVest[1])));
+               if(data[0] > 1){data[0] = 0;    }
+               if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
+               
+               return data;
+       }
+       catch(exception& e) {
+               m->errorOut(e, "JAbund", "getValues");
+               exit(1);
+       }
+}
+
+/***********************************************************************/