added set.dir command and modified commands to redirect input and output, removed...

[mothur.git] / sharedcommand.h

diff --git a/sharedcommand.h b/sharedcommand.h
index 5b922b6d6255eb993f8607fedc9696d4054f7caa..3d39b8b7a54ba348966f80d41cf1cea3b9bc9283 100644 (file)
--- a/sharedcommand.h
+++ b/sharedcommand.h
@@ -26,7 +26,7 @@ class GlobalData;
 class SharedCommand : public Command {
        
 public:
-       SharedCommand();        
+       SharedCommand(string);  
        ~SharedCommand();
        int execute();  
        void help() {}
@@ -44,7 +44,7 @@ private:
        GroupMap* groupMap;
        vector<string> groups;
        ofstream out;
-       string filename, fileroot;
+       string filename, fileroot, outputDir;
        bool firsttime, pickedGroups;
        map<string, ofstream*> filehandles;
        map<string, ofstream*>::iterator it3;