added checks for ^C to quit command instead of program

[mothur.git] / sharedcommand.h

diff --git a/sharedcommand.h b/sharedcommand.h
index 3d39b8b7a54ba348966f80d41cf1cea3b9bc9283..399f3d3966bf828ec32cd790dd0d7d14c7e08c25 100644 (file)
--- a/sharedcommand.h
+++ b/sharedcommand.h
@@ -33,16 +33,16 @@ public:
        
 private:
        void printSharedData(vector<SharedRAbundVector*>);
-       void createMisMatchFile();
+       int createMisMatchFile();
        bool isValidGroup(string, vector<string>);
-       void eliminateZeroOTUS(vector<SharedRAbundVector*>&);
+       int eliminateZeroOTUS(vector<SharedRAbundVector*>&);
        
        GlobalData* globaldata;
        ReadOTUFile* read;
        SharedListVector* SharedList;
        InputData* input;
        GroupMap* groupMap;
-       vector<string> groups;
+       vector<string> groups, outputNames;
        ofstream out;
        string filename, fileroot, outputDir;
        bool firsttime, pickedGroups;