X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=sharedcommand.h;h=399f3d3966bf828ec32cd790dd0d7d14c7e08c25;hp=3d39b8b7a54ba348966f80d41cf1cea3b9bc9283;hb=aa9238c0a9e6e7aa0ed8b8b606b08ad4fd7dcfe3;hpb=182db2b6f1747bc1e0b8cd3eceec8751abdd31d5

diff --git a/sharedcommand.h b/sharedcommand.h
index 3d39b8b..399f3d3 100644
--- a/sharedcommand.h
+++ b/sharedcommand.h
@@ -33,16 +33,16 @@ public:
 	
 private:
 	void printSharedData(vector<SharedRAbundVector*>);
-	void createMisMatchFile();
+	int createMisMatchFile();
 	bool isValidGroup(string, vector<string>);
-	void eliminateZeroOTUS(vector<SharedRAbundVector*>&);
+	int eliminateZeroOTUS(vector<SharedRAbundVector*>&);
 	
 	GlobalData* globaldata;
 	ReadOTUFile* read;
 	SharedListVector* SharedList;
 	InputData* input;
 	GroupMap* groupMap;
-	vector<string> groups;
+	vector<string> groups, outputNames;
 	ofstream out;
 	string filename, fileroot, outputDir;
 	bool firsttime, pickedGroups;