changes while testing

[mothur.git] / sequence.hpp

diff --git a/sequence.hpp b/sequence.hpp
index db4c4f32b9992a27f63e15908d881a77d5507980..ad3a4b40c238c4260d36f7afea027b903539c8a0 100644 (file)
--- a/sequence.hpp
+++ b/sequence.hpp
@@ -48,6 +48,7 @@ public:
        string getPairwise();
        string getUnaligned();
        string getInlineSeq();
+    int getNumNs();
        int getNumBases();
        int getStartPos();
        int getEndPos();
@@ -69,6 +70,8 @@ private:
        string getCommentString(ifstream&);
        string getSequenceString(istringstream&, int&);
        string getCommentString(istringstream&);
+    string getSequenceName(ifstream&);
+    string getSequenceName(istringstream&);
        string name;
        string unaligned;
        string aligned;