X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=sequence.hpp;h=ad3a4b40c238c4260d36f7afea027b903539c8a0;hp=db4c4f32b9992a27f63e15908d881a77d5507980;hb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;hpb=8da8321bc4d705f6c156248d6229c60a0204f750

diff --git a/sequence.hpp b/sequence.hpp
index db4c4f3..ad3a4b4 100644
--- a/sequence.hpp
+++ b/sequence.hpp
@@ -48,6 +48,7 @@ public:
 	string getPairwise();
 	string getUnaligned();
 	string getInlineSeq();
+    int getNumNs();
 	int getNumBases();
 	int getStartPos();
 	int getEndPos();
@@ -69,6 +70,8 @@ private:
 	string getCommentString(ifstream&);
 	string getSequenceString(istringstream&, int&);
 	string getCommentString(istringstream&);
+    string getSequenceName(ifstream&);
+    string getSequenceName(istringstream&);
 	string name;
 	string unaligned;
 	string aligned;