changed how we break up the files on parallelized commands to avoid scanning file.

[mothur.git] / seqsummarycommand.h

diff --git a/seqsummarycommand.h b/seqsummarycommand.h
index a62572673c3d7497007ab959157fd41dfb6b124b..6abf06a6fcf11bba1a714c6b3efdfd2be37b7285 100644 (file)
--- a/seqsummarycommand.h
+++ b/seqsummarycommand.h
@@ -27,15 +27,15 @@ private:
        
        struct linePair {
                unsigned long int start;
-               int num;
-               linePair(unsigned long int i, long int j) : start(i), num(j) {}
+               unsigned long int end;
+               linePair(unsigned long int i, unsigned long int j) : start(i), end(j) {}
        };
+
        vector<linePair*> lines;
        vector<int> processIDS;
        
        int createProcessesCreateSummary(vector<int>&, vector<int>&, vector<int>&, vector<int>&, vector<int>&, string, string);
        int driverCreateSummary(vector<int>&, vector<int>&, vector<int>&, vector<int>&, vector<int>&, string, string, linePair*);       
-       int setLines(string);
 
        #ifdef USE_MPI
        int MPICreateSummary(int, int, vector<int>&, vector<int>&, vector<int>&, vector<int>&, vector<int>&, MPI_File&, MPI_File&, vector<unsigned long int>&);