1 #ifndef SEQSUMMARYCOMMAND_H
2 #define SEQSUMMARYCOMMAND_H
8 * Created by Pat Schloss on 5/30/09.
9 * Copyright 2009 Patrick D. Schloss. All rights reserved.
14 #include "command.hpp"
16 class SeqSummaryCommand : public Command {
18 SeqSummaryCommand(string);
25 string fastafile, outputDir;
29 unsigned long int start;
30 unsigned long int end;
31 linePair(unsigned long int i, unsigned long int j) : start(i), end(j) {}
34 vector<linePair*> lines;
35 vector<int> processIDS;
37 int createProcessesCreateSummary(vector<int>&, vector<int>&, vector<int>&, vector<int>&, vector<int>&, string, string);
38 int driverCreateSummary(vector<int>&, vector<int>&, vector<int>&, vector<int>&, vector<int>&, string, string, linePair*);
41 int MPICreateSummary(int, int, vector<int>&, vector<int>&, vector<int>&, vector<int>&, vector<int>&, MPI_File&, MPI_File&, vector<unsigned long int>&);