modified reverse.seqs and qualscores.cpp

[mothur.git] / seqerrorcommand.cpp

diff --git a/seqerrorcommand.cpp b/seqerrorcommand.cpp
index 88794788a0472743665838721bb28b9b761f1765..b31c4e0d89ecdb7243e9f4e42d3dc0af1d903450 100644 (file)
--- a/seqerrorcommand.cpp
+++ b/seqerrorcommand.cpp
@@ -343,7 +343,7 @@ int SeqErrorCommand::execute(){
                                int startBase = report.getQueryStart();
                                int endBase = report.getQueryEnd();
 
-                               quality = QualityScores(qualFile, origLength);
+                               quality = QualityScores(qualFile);
 
                                if(!ignoreSeq){
                                        quality.updateQScoreErrorMap(qScoreErrorMap, minCompare.sequence, startBase, endBase, minCompare.weight);