added mothurOutJustToScreen function and changed all counter outputs to use it.

[mothur.git] / seqerrorcommand.cpp

diff --git a/seqerrorcommand.cpp b/seqerrorcommand.cpp
index 2bd7054afc33c4f0600683a1b8ebe50a2fd338c4..203a71ede5544a3d1c5e2eba73072fa825445aac 100644 (file)
--- a/seqerrorcommand.cpp
+++ b/seqerrorcommand.cpp
@@ -881,7 +881,7 @@ int SeqErrorCommand::driver(string filename, string qFileName, string rFileName,
                                if (queryFile.eof()) { break; }
                        #endif
                        
-                       if(index % 100 == 0){   m->mothurOut(toString(index));  m->mothurOutEndLine(); }
+                       if(index % 100 == 0){   m->mothurOutJustToScreen(toString(index)+"\n");  }
                }
                queryFile.close();
                outChimeraReport.close();
@@ -892,7 +892,7 @@ int SeqErrorCommand::driver(string filename, string qFileName, string rFileName,
                else if(qFileName != "" && aligned == false){   qualFile.close();                       }
         
                //report progress
-               m->mothurOut(toString(index));  m->mothurOutEndLine();
+               m->mothurOutJustToScreen(toString(index)+"\n"); 
                
                return index;
        }