X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=seqerrorcommand.cpp;h=203a71ede5544a3d1c5e2eba73072fa825445aac;hp=2bd7054afc33c4f0600683a1b8ebe50a2fd338c4;hb=c48d91112209b841444923670dca5454da0e2a4d;hpb=2cfb747aa8f63bde9c1114001e6d2e81ccd26178

diff --git a/seqerrorcommand.cpp b/seqerrorcommand.cpp
index 2bd7054..203a71e 100644
--- a/seqerrorcommand.cpp
+++ b/seqerrorcommand.cpp
@@ -881,7 +881,7 @@ int SeqErrorCommand::driver(string filename, string qFileName, string rFileName,
 				if (queryFile.eof()) { break; }
 			#endif
 			
-			if(index % 100 == 0){	m->mothurOut(toString(index));	m->mothurOutEndLine(); }
+			if(index % 100 == 0){	m->mothurOutJustToScreen(toString(index)+"\n");	 }
 		}
 		queryFile.close();
 		outChimeraReport.close();
@@ -892,7 +892,7 @@ int SeqErrorCommand::driver(string filename, string qFileName, string rFileName,
 		else if(qFileName != "" && aligned == false){   qualFile.close();                       }
         
 		//report progress
-		m->mothurOut(toString(index));	m->mothurOutEndLine();
+		m->mothurOutJustToScreen(toString(index)+"\n");	
 		
 		return index;
 	}