added set.dir command and modified commands to redirect input and output, removed...

[mothur.git] / screenseqscommand.h

diff --git a/screenseqscommand.h b/screenseqscommand.h
index 269275d38409c251ef3f9b0b1c2552602367f348..5b44091dbd07d044f0de288490ff0d4633495008 100644 (file)
--- a/screenseqscommand.h
+++ b/screenseqscommand.h
@@ -26,7 +26,7 @@ private:
        void screenAlignReport(set<string>);
        
        bool abort;
-       string fastafile, namefile, groupfile, alignreport;
+       string fastafile, namefile, groupfile, alignreport, outputDir;
        int startPos, endPos, maxAmbig, maxHomoP, minLength, maxLength;
 };