fixed bug with shhh.flow from file path name in write functions, added "smart" featur...

[mothur.git] / screenseqscommand.cpp

diff --git a/screenseqscommand.cpp b/screenseqscommand.cpp
index 16618f74cc8e251c7d28d10ca37fcd2e7b09d017..41067396c6f5333faeaf3346afd9b865ad351531 100644 (file)
--- a/screenseqscommand.cpp
+++ b/screenseqscommand.cpp
@@ -260,6 +260,11 @@ ScreenSeqsCommand::ScreenSeqsCommand(string option)  {
                        
                        temp = validParameter.validFile(parameters, "criteria", false); if (temp == "not found"){       temp = "90";                            }
                        m->mothurConvert(temp, criteria); 
+                       
+                       if (namefile == "") {
+                               vector<string> files; files.push_back(fastafile);
+                               parser.getNameFile(files);
+                       }
                }
 
        }