added method parameter to get.oturep. options method=abundance or distance. default...

[mothur.git] / screenseqscommand.cpp

diff --git a/screenseqscommand.cpp b/screenseqscommand.cpp
index 033fbcad422abb62cd2470866bd4666db9e907bd..3718c9a9c0cf843d9f91311b8b7b3cdee814f455 100644 (file)
--- a/screenseqscommand.cpp
+++ b/screenseqscommand.cpp
@@ -294,7 +294,8 @@ ScreenSeqsCommand::ScreenSeqsCommand(string option)  {
             
             summaryfile = validParameter.validFile(parameters, "summary", true);
                        if (summaryfile == "not open") { summaryfile = ""; abort = true; }
-                       else if (summaryfile == "not found") { summaryfile = "";  }     
+                       else if (summaryfile == "not found") { summaryfile = "";  }
+            else { m->setSummaryFile(summaryfile); }
             
             if ((namefile != "") && (countfile != "")) {
                 m->mothurOut("[ERROR]: you may only use one of the following: name or count."); m->mothurOutEndLine(); abort = true;