X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=screenseqscommand.cpp;h=3718c9a9c0cf843d9f91311b8b7b3cdee814f455;hp=033fbcad422abb62cd2470866bd4666db9e907bd;hb=a54ba6143022dc7294f4fdc468fc10b627c64b0e;hpb=1a20e24ee786195ab0e1cccd4f5aede7a88f3f4e

diff --git a/screenseqscommand.cpp b/screenseqscommand.cpp
index 033fbca..3718c9a 100644
--- a/screenseqscommand.cpp
+++ b/screenseqscommand.cpp
@@ -294,7 +294,8 @@ ScreenSeqsCommand::ScreenSeqsCommand(string option)  {
             
             summaryfile = validParameter.validFile(parameters, "summary", true);
 			if (summaryfile == "not open") { summaryfile = ""; abort = true; }
-			else if (summaryfile == "not found") { summaryfile = "";  }	
+			else if (summaryfile == "not found") { summaryfile = "";  }
+            else { m->setSummaryFile(summaryfile); }
             
             if ((namefile != "") && (countfile != "")) {
                 m->mothurOut("[ERROR]: you may only use one of the following: name or count."); m->mothurOutEndLine(); abort = true;