--- /dev/null
+#ifndef REPORTFILE
+#define REPORTFILE
+
+/*
+ * reportfile.h
+ * Mothur
+ *
+ * Created by Pat Schloss on 7/12/10.
+ * Copyright 2010 Schloss Lab. All rights reserved.
+ *
+ */
+
+
+
+/**************************************************************************************************/
+
+class ReportFile {
+public:
+ ReportFile();
+ ReportFile(ifstream&);
+ ReportFile(ifstream&, string);
+
+ string getQueryName() { return queryName; }
+ string getTemplateName() { return templateName; }
+ string getSearchMethod() { return searchMethod; }
+ string getAlignmentMethod() { return alignmentMethod; }
+
+ int getQueryLength() { return queryLength; }
+ int getTemplateLength() { return templateLength; }
+ int getQueryStart() { return queryStart; }
+ int getQueryEnd() { return queryEnd; }
+ int getTemplateStart() { return templateStart; }
+ int getTemplateEnd() { return templateEnd; }
+ int getPairwiseAlignmentLength() { return pairwiseAlignmentLength; }
+ int getGapsInQuery() { return gapsInQuery; }
+ int getGapsInTemplate() { return gapsInTemplate; }
+ int getLongestInsert() { return longestInsert; }
+
+ float getSearchScore() { return searchScore; }
+ float getSimBtwnQueryAndTemplate() { return simBtwnQueryAndTemplate; }
+
+
+private:
+
+ MothurOut* m;
+
+ string queryName, templateName, searchMethod, alignmentMethod, dummySearchScore;
+ int queryLength, templateLength, queryStart, queryEnd, templateStart, templateEnd, pairwiseAlignmentLength, gapsInQuery, gapsInTemplate, longestInsert;
+ float searchScore, simBtwnQueryAndTemplate;
+
+};
+
+/**************************************************************************************************/
+
+#endif