added fastq to list.seqs, get.seqs and remove.seqs. fixed bug where venn command...

[mothur.git] / removeseqscommand.h

diff --git a/removeseqscommand.h b/removeseqscommand.h
index 1a6365dac35b9e18669f8827c4054268b9123d9e..7aaff172800c43b160fe62b2b49c2035e08502f8 100644 (file)
--- a/removeseqscommand.h
+++ b/removeseqscommand.h
@@ -35,12 +35,13 @@ class RemoveSeqsCommand : public Command {
        
        private:
                set<string> names;
-               string accnosfile, fastafile, namefile, groupfile, countfile, alignfile, listfile, taxfile, qualfile, outputDir;
+               string accnosfile, fastafile, fastqfile, namefile, groupfile, countfile, alignfile, listfile, taxfile, qualfile, outputDir;
                bool abort, dups;
                vector<string> outputNames;
         map<string, string> uniqueMap;
                
                int readFasta();
+        int readFastq();
                int readName();
                int readGroup();
         int readCount();