changes while testing

[mothur.git] / removerarecommand.cpp

diff --git a/removerarecommand.cpp b/removerarecommand.cpp
index cf6674e5a7cbfd65c9e17e4a22cd24678502239f..a551681fb6721e4b3670fe912e1b6bfe909dd388 100644 (file)
--- a/removerarecommand.cpp
+++ b/removerarecommand.cpp
@@ -411,7 +411,7 @@ int RemoveRareCommand::processList(){
                        util.setGroups(Groups, namesGroups);
                        m->openOutputFile(outputGroupFileName, outGroup);
                }else if (countfile != "") {
-            ct.readTable(countfile);
+            ct.readTable(countfile, true);
             if (ct.hasGroupInfo()) {
                 vector<string> namesGroups = ct.getNamesOfGroups();
                 SharedUtil util;