X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=removerarecommand.cpp;h=a551681fb6721e4b3670fe912e1b6bfe909dd388;hp=cf6674e5a7cbfd65c9e17e4a22cd24678502239f;hb=df7e3ff9f68ef157b0328a2d353c3258c5d45d89;hpb=b740fb182372143e152143c6cc5b9ac8591f09b7

diff --git a/removerarecommand.cpp b/removerarecommand.cpp
index cf6674e..a551681 100644
--- a/removerarecommand.cpp
+++ b/removerarecommand.cpp
@@ -411,7 +411,7 @@ int RemoveRareCommand::processList(){
 			util.setGroups(Groups, namesGroups);
 			m->openOutputFile(outputGroupFileName, outGroup);
 		}else if (countfile != "") {
-            ct.readTable(countfile);
+            ct.readTable(countfile, true);
             if (ct.hasGroupInfo()) {
                 vector<string> namesGroups = ct.getNamesOfGroups();
                 SharedUtil util;