rewrote metastats command in c++, added mothurRemove function to handle ~ error....

[mothur.git] / removerarecommand.cpp

diff --git a/removerarecommand.cpp b/removerarecommand.cpp
index c320fa4d8854f003486bc71c8e6b0806ec7ae0e3..f82c4b03ead17a723b7d61e2643e5054907d9fd4 100644 (file)
--- a/removerarecommand.cpp
+++ b/removerarecommand.cpp
@@ -251,7 +251,7 @@ int RemoveRareCommand::execute(){
                if (listfile != "")                     {               processList();          }
                if (sharedfile != "")           {               processShared();        }
                
-               if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) {        remove(outputNames[i].c_str()); } return 0; }
+               if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) {        m->mothurRemove(outputNames[i]); } return 0; }
                        
                if (outputNames.size() != 0) {
                        m->mothurOutEndLine();
@@ -365,7 +365,7 @@ int RemoveRareCommand::processList(){
                        
                        //for each bin
                        for (int i = 0; i < list->getNumBins(); i++) {
-                               if (m->control_pressed) {  if (groupfile != "") { delete groupMap; outGroup.close(); remove(outputGroupFileName.c_str()); } out.close();  remove(outputFileName.c_str());  return 0; }
+                               if (m->control_pressed) {  if (groupfile != "") { delete groupMap; outGroup.close(); m->mothurRemove(outputGroupFileName); } out.close();  m->mothurRemove(outputFileName);  return 0; }
                                
                                //parse out names that are in accnos file
                                string binnames = list->get(i);