fixed io

[mothur.git] / removeotuscommand.h

diff --git a/removeotuscommand.h b/removeotuscommand.h
index cb017b450e78123ea2cd32bbbf93675cd1bc15b5..3a52a39f120a0d2af788478df3a590c64a7f9306 100644 (file)
--- a/removeotuscommand.h
+++ b/removeotuscommand.h
@@ -25,9 +25,11 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "remove.otus";                         }
        string getCommandCategory()             { return "OTU-Based Approaches";        }
+       string getOutputFileNameTag(string, string);
        string getHelpString(); 
        string getCitation() { return "http://www.mothur.org/wiki/Remove.otus"; }
-       
+       string getDescription()         { return "outputs a new list file containing the otus NOT containing sequences from the groups specified"; }
+
        int execute(); 
        void help() { m->mothurOut(getHelpString()); }  
        
@@ -37,7 +39,6 @@ private:
        vector<string> outputNames, Groups;
        GroupMap* groupMap;
        
-       void readAccnos();
        int readListGroup();
        int processList(ListVector*&, GroupMap*&, ofstream&, ofstream&, bool&);