Initial revision

[mothur.git] / rarefact.h

diff --git a/rarefact.h b/rarefact.h
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+#ifndef RAREFACT_H
+#define RAREFACT_H
+
+using namespace std;
+
+#include "rarefactioncurvedata.h"
+#include "raredisplay.h"
+#include "ordervector.hpp"
+
+
+
+class Rarefact {
+       
+public:
+       Rarefact(OrderVector* o, vector<Display*> disp) :
+                       numSeqs(o->getNumSeqs()), order(o), displays(disp), label(o->getLabel())  {};
+       Rarefact(SharedOrderVector* sharedorder, vector<Display*> disp) :
+                                       numSeqs(sharedorder->getNumSeqs()), sharedorder(sharedorder), displays(disp), label(sharedorder->getLabel())  {};
+
+       ~Rarefact(){};
+       void getCurve(int, int);
+       void getSharedCurve(int, int);
+       
+private:
+       SharedOrderVector* sharedorder;
+       GlobalData* globaldata;
+       OrderVector* order;
+       vector<Display*> displays;
+       int numSeqs, numGroupComb;
+       string label;
+       void mergeVectors(SharedRAbundVector*, SharedRAbundVector*);
+       vector<SharedRAbundVector*> lookup; 
+
+};
+
+
+#endif
+