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[mothur.git] / rarecalc.h

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+#ifndef RARECALC_H
+#define RARECALC_H
+/*
+ *  rarecalc.h
+ *  Dotur
+ *
+ *  Created by Sarah Westcott on 1/7/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+/* This class is not currently used by Mothur */
+
+#include "calculator.h"
+
+/***********************************************************************/
+class RareCalc {
+
+public:
+       RareCalc(RAbundVector* b) : bins(b), numSeqs(b->getNumSeqs()), maxRank(b->getMaxRank()), numBins(b->getNumBins()) {     m = MothurOut::getInstance(); bMatrix = m->binomial(numSeqs+1); }
+       EstOutput getValues(int);
+       string getName()        {       return "rarecalc";      }
+private:
+       RAbundVector* bins;
+       vector<vector<double> > bMatrix;
+       int numSeqs, maxRank, numBins;
+       MothurOut* m;
+};
+
+/***********************************************************************/
+
+#endif